CX046758

Overview
NameCX046758
Unique NameCX046758
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length760
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig661 contig Csv1_Contig661:342..1100. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1A_ARATH (GTP-binding protein SAR1A OS=Arabidopsis thaliana GN=SAR1A PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.142e-46
Identity = 95/132 (71.97%), Postives = 100/132 (75.76%), Query Frame = -1
Query:  365 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 760
            GKIKFKAFDLGGHQIARRVW                  KERFAESKK           A+VPFL+LGNKIDIPYAA E+ELRY LGLSNFTTGKGKVNL DSNVRPLEVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:   62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLASVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVNLTDSNVRPLEVFMCSIVRKMGYGEGFKWVSQYIK 193          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1A_BRACM (GTP-binding protein SAR1A OS=Brassica campestris GN=SAR1A PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 1.031e-44
Identity = 94/132 (71.21%), Postives = 98/132 (74.24%), Query Frame = -1
Query:  365 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 760
            GKIKFKAFDLGGHQIARRVW                  KERFAESKK           A VPFL+LGNKIDIPYAA E+ELRY LGLSNFTTGKGKV+L  SNVRPLEVFMCSIVRKMGYG+GFKWLSQYIK
Sbjct:   62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASEDELRYHLGLSNFTTGKGKVDLVGSNVRPLEVFMCSIVRKMGYGEGFKWLSQYIK 193          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1B_ARATH (GTP-binding protein SAR1B OS=Arabidopsis thaliana GN=SAR1B PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.945e-43
Identity = 91/131 (69.47%), Postives = 96/131 (73.28%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            GKIKFKAFDLGGHQIARRVW                  KERFAESK+           A VPFL+LGNKIDIPYAA E+ELRY LGL+NFTTGKGKV L DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:   62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFAESKRELDALLSDEALATVPFLILGNKIDIPYAASEDELRYHLGLTNFTTGKGKVTLGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 192          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR2_SOLLC (GTP-binding protein SAR2 OS=Solanum lycopersicum GN=SAR2 PE=2 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.394e-41
Identity = 84/132 (63.64%), Postives = 94/132 (71.21%), Query Frame = -1
Query:  365 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 760
            G IKFKAFDLGGHQIARRVW                  +ERF E+KK            NVPFL+LGNKIDIPYAA E+ELRY LGL+  TTGKG +NLA +NVRP+EVFMCSIVRKMGYG+GFKW+SQYIK
Sbjct:   62 GNIKFKAFDLGGHQIARRVWRDYYAKVDAVVYLVDANDRERFPEAKKELDGLLSDESLTNVPFLILGNKIDIPYAASEDELRYHLGLTGVTTGKGNINLAGTNVRPIEVFMCSIVRKMGYGEGFKWMSQYIK 193          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1B_BRACM (GTP-binding protein SAR1B OS=Brassica campestris GN=SAR1B PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.297e-41
Identity = 90/133 (67.67%), Postives = 95/133 (71.43%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLA--DSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            GKIKFKAFDLGGHQIARRVW                  KERF+ESKK           A VPFL+LGNKID PYAA E+ELRY LGL+NFTTGKGKV  A  DS VRPLEVFMCSIVRKMGYG+GFKWLSQYI
Sbjct:   62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDKERFSESKKELDALLSDDALATVPFLILGNKIDNPYAASEDELRYHLGLTNFTTGKGKVTTAGGDSGVRPLEVFMCSIVRKMGYGEGFKWLSQYI 194          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_USTMA (Small COPII coat GTPase SAR1 OS=Ustilago maydis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.937e-28
Identity = 64/131 (48.85%), Postives = 82/131 (62.60%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G++KF  +DLGGHQ ARR+W                   ERFAE++            ++VPFL+LGNKID P A  EEELR  +GL   TTGKGKV L D  +RP+E+FMCS+V + GYG+GF+W+SQYI
Sbjct:   62 GQVKFTTYDLGGHQQARRLWKDYFPEVDGIVFLVDTQDHERFAEARAELDALLSIEELSSVPFLILGNKIDAPGAVSEEELRQAIGLYQ-TTGKGKVPLKD--IRPIEIFMCSVVMRQGYGEGFRWISQYI 189          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_TOBAC (GTP-binding protein SAR1 OS=Nicotiana tabacum GN=SAR1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.353e-27
Identity = 71/137 (51.82%), Postives = 83/137 (60.58%), Query Frame = -1
Query:  365 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGN---KIDIPYAAFEE-ELRYPLGLSNFTT-GKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYIK 760
            GKIKFKAFDLGGHQIARRVW                  KERFAESKK               FL L N   +I+ P     +   RY +G +  +   +GKVNLADSNVRP+EVFMCSIVR+MGYG+GF+W+SQYIK
Sbjct:   62 GKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDSFDKERFAESKKELDALLSGWSSLAHCFLFLDNWVTRIEHPICCLRKMNWRYHMGANGASPLARGKVNLADSNVRPVEVFMCSIVRQMGYGEGFRWMSQYIK 198          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_CRYNE (Small COPII coat GTPase SAR1 OS=Cryptococcus neoformans GN=SAR1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.685e-27
Identity = 66/131 (50.38%), Postives = 79/131 (60.31%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G +KF  +DLGGH  ARR+W                   ERFAESK            A VPFL+LGNKID   A  EE+LR+ LGL   TTGKGK+ L D  +RP+EVFMCS+V + GYG+GF+WLSQYI
Sbjct:   62 GNVKFTTYDLGGHIQARRLWRDYFPEVDGIVFLVDSADAERFAESKAELDSLLSIESLAQVPFLILGNKIDAYGAVSEEQLRHELGLYQ-TTGKGKIPLRD--IRPIEVFMCSVVMRQGYGEGFRWLSQYI 189          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1_YARLI (Small COPII coat GTPase SAR1 OS=Yarrowia lipolytica GN=SAR1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.425e-27
Identity = 66/131 (50.38%), Postives = 76/131 (58.02%), Query Frame = -1
Query:  368 GKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 760
            G  KF  FDLGGH  ARRVW                    RFAESK              VPFL+LGNKID+P A  E EL+  LGL   TTGKGKV L + N+RP+E+FMCSIV + GYGDG +WLSQY+
Sbjct:   62 GNCKFTTFDLGGHIQARRVWKDYFPEVNGIVFLVDAADPTRFAESKAELDSLLAIEQLKTVPFLILGNKIDMPQAVSELELKDALGLYQ-TTGKGKVPL-EGNIRPIEIFMCSIVMRQGYGDGIRWLSQYV 190          
BLAST of CX046758 vs. ExPASy Swiss-Prot
Match: SAR1B_RAT (GTP-binding protein SAR1b OS=Rattus norvegicus GN=Sar1b PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.654e-26
Identity = 62/127 (48.82%), Postives = 74/127 (58.27%), Query Frame = -1
Query:  368 FKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXKERFAESKKXXXXXXXXXXXANVPFLVLGNKIDIPYAAFEEELRYPLGLSNFTTGKGKVNLADSNVRPLEVFMCSIVRKMGYGDGFKWLSQYI 748
            F  FDLGGH  ARRVW                   ER  ESK+           ANVP L+LGNKID P A  EE LR   GL   TTGKG V+L + N RPLEVFMCS++++ GYG+GF+W++QYI
Sbjct:   71 FTTFDLGGHLQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI 197          
The following BLAST results are available for this feature:
BLAST of CX046758 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
SAR1A_ARATH7.142e-4671.97GTP-binding protein SAR1A OS=Arabidopsis thaliana ... [more]
SAR1A_BRACM1.031e-4471.21GTP-binding protein SAR1A OS=Brassica campestris G... [more]
SAR1B_ARATH1.945e-4369.47GTP-binding protein SAR1B OS=Arabidopsis thaliana ... [more]
SAR2_SOLLC1.394e-4163.64GTP-binding protein SAR2 OS=Solanum lycopersicum G... [more]
SAR1B_BRACM5.297e-4167.67GTP-binding protein SAR1B OS=Brassica campestris G... [more]
SAR1_USTMA3.937e-2848.85Small COPII coat GTPase SAR1 OS=Ustilago maydis GN... [more]
SAR1_TOBAC4.353e-2751.82GTP-binding protein SAR1 OS=Nicotiana tabacum GN=S... [more]
SAR1_CRYNE5.685e-2750.38Small COPII coat GTPase SAR1 OS=Cryptococcus neofo... [more]
SAR1_YARLI7.425e-2750.38Small COPII coat GTPase SAR1 OS=Yarrowia lipolytic... [more]
SAR1B_RAT1.654e-2648.82GTP-binding protein SAR1b OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A07_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A07-B13-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046758 ID=CX046758; Name=CX046758; organism=Citrus sinensis; type=EST; length=760bp
TTTTTTTTTTTTTTTTTAAGGGATGTTTTGAACTTGAAATTAACCCTTAA
CAAAATAATAACAAATAATAATTCTAATATCTGCTCCACAGCAAAACATG
ACAATAGGTGCAAGTAATTTGACAAAACTACAATACCAAATAATGACCTG
CTATCCACAAGTAAATTTTACAGAGCAGTAACATAACTACCACCTTCCAA
ACAGACTCAAAACACAGTACCTCTGGTTCAAGTCCCACTAACAGACTAAA
AAATCAAACAAGTAGATAAACACAATTTTTTTTTTGGTGAAACAGGGTGT
AGTAGGCATGGGTGAAATTTTGAAATCTGCATTACTTCTATAACACTTCC
TGAGCATTACCCTACTTAATGTATTGAGAGAGCCATTTGAAACCATCACC
ATATCCCATTTTGCGAACTATGCTACACATAAACACCTCCAGTGGACGGA
CATTTGAGTCCGCTAGATTAACCTTCCCCTTCCCAGTGGTGAAATTTGAT
AGGCCAAGGGGGTAACGCAACTCTTCCTCAAAAGCAGCATAAGGGATGTC
AATCTTGTTTCCTAACACAAGAAAAGGAACATTGGCCAATGCCTCATCAA
AAAGGAGTGCATCCAGTTCTTTCTTTGATTCTGCAAACCTCTCTTTGTCA
TAGGCATCCACTAGGTATACCACAGCATCAACCTTCGCATAGTAATCCTT
CCAGACTCTCCTAGCAATCTGATGGCCTCCCAAATCAAACGCCTTGAACT
TAATTTTCCC
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