CX046754

Overview
NameCX046754
Unique NameCX046754
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length562
Libraries
Library NameType
Ruby Orange Developing Seed cDNA Library UCRCS09cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13773 contig Csv1_Contig13773:18..579. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_GOSHI (60S ribosomal protein L44 OS=Gossypium hirsutum GN=RPL44 PE=3 SV=3)

HSP 1 Score: 219.55 bits (558), Expect = 8.640e-57
Identity = 102/102 (100.00%), Postives = 102/102 (100.00%), Query Frame = -1
Query:  209 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGT 514
            MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGT
Sbjct:    1 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGT 102          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL36A_ARATH (60S ribosomal protein L36a OS=Arabidopsis thaliana GN=RPL36AA PE=2 SV=3)

HSP 1 Score: 207.608 bits (527), Expect = 3.398e-53
Identity = 95/102 (93.14%), Postives = 98/102 (96.08%), Query Frame = -1
Query:  209 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGT 514
            MVN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQ CKH SQ PIKRCKHFEIGGDKKGKGT
Sbjct:    1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGT 102          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_PHARH (60S ribosomal protein L44 OS=Phaffia rhodozyma GN=RPL44 PE=3 SV=3)

HSP 1 Score: 179.489 bits (454), Expect = 9.909e-45
Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECSVCKYKMQMTLKRCKHFELGGDKKTKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_CRYNE (60S ribosomal protein L44 OS=Cryptococcus neoformans GN=RPL44 PE=3 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.690e-44
Identity = 81/101 (80.20%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK +G
Sbjct:    1 MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKTKHQLALKRCKHFELGGDKKQRG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_PICJA (60S ribosomal protein L44 OS=Pichia jadinii GN=RPL44 PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.423e-44
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT++TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLALKRCKHFELGGDKKQKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_PICCI (60S ribosomal protein L44 OS=Pichia ciferrii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 6.423e-44
Identity = 82/101 (81.19%), Postives = 89/101 (88.12%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT+KTYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGD+K KG
Sbjct:    1 MVNVPKTRKTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDRKQKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_COPCI (60S ribosomal protein L44 OS=Coprinopsis cinerea GN=RPL44 PE=3 SV=3)

HSP 1 Score: 176.792 bits (447), Expect = 6.423e-44
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVN+PKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_COPC7 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=RPL44 PE=3 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 6.423e-44
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVN+PKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK+  Q  +KRCKHFE+GG+KK KG
Sbjct:    1 MVNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECTVCKYKMQVSLKRCKHFELGGEKKTKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_DEBHA (60S ribosomal protein L44 OS=Debaryomyces hansenii GN=RPL44 PE=3 SV=3)

HSP 1 Score: 175.252 bits (443), Expect = 1.869e-43
Identity = 81/101 (80.20%), Postives = 88/101 (87.13%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT++TYCK KECRKHT HKVTQYK GK SL AQGKRRYDRKQ GYGGQTKPVFHKKAKTTKK+VLRL+C  CK  +Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRRTYCKGKECRKHTQHKVTQYKAGKASLFAQGKRRYDRKQKGYGGQTKPVFHKKAKTTKKVVLRLECVVCKTKAQLSLKRCKHFELGGDKKQKG 101          
BLAST of CX046754 vs. ExPASy Swiss-Prot
Match: RL44_CANGY (60S ribosomal protein L44 OS=Candida glycerinogenes GN=RPL44 PE=3 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 3.188e-43
Identity = 80/101 (79.21%), Postives = 88/101 (87.13%), Query Frame = -1
Query:  212 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKG 514
            MVNVPKT+KTYCK K+C+KHT HKVTQYK GK SL +QGKRRYDRKQSGYGGQTKPVFHKKAKTTKK+VLRL+C  CK   Q  +KRCKHFE+GGDKK KG
Sbjct:    1 MVNVPKTRKTYCKGKQCKKHTQHKVTQYKAGKASLYSQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKVVLRLECVACKTKLQLSLKRCKHFELGGDKKQKG 101          
The following BLAST results are available for this feature:
BLAST of CX046754 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
RL44_GOSHI8.640e-57100.0060S ribosomal protein L44 OS=Gossypium hirsutum GN... [more]
RL36A_ARATH3.398e-5393.1460S ribosomal protein L36a OS=Arabidopsis thaliana... [more]
RL44_PHARH9.909e-4580.2060S ribosomal protein L44 OS=Phaffia rhodozyma GN=... [more]
RL44_CRYNE1.690e-4480.2060S ribosomal protein L44 OS=Cryptococcus neoforma... [more]
RL44_PICJA6.423e-4481.1960S ribosomal protein L44 OS=Pichia jadinii GN=RPL... [more]
RL44_PICCI6.423e-4481.1960S ribosomal protein L44 OS=Pichia ciferrii GN=RP... [more]
RL44_COPCI6.423e-4478.2260S ribosomal protein L44 OS=Coprinopsis cinerea G... [more]
RL44_COPC76.423e-4478.2260S ribosomal protein L44 OS=Coprinopsis cinerea (... [more]
RL44_DEBHA1.869e-4380.2060S ribosomal protein L44 OS=Debaryomyces hansenii... [more]
RL44_CANGY3.188e-4379.2160S ribosomal protein L44 OS=Candida glycerinogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS09_10A05_b Ruby Orange Developing Seed cDNA Library UCRCS09 Citrus sinensis cDNA clone UCRCS09-10A05-B9-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX046754 ID=CX046754; Name=CX046754; organism=Citrus sinensis; type=EST; length=562bp
TTTTTTTTTTTTTTTTTGGTAAAAAAATCCAAATATAAAATTAACTGATA
TAATAAGCACTTAACAAACAACCGCTTCAAGTTTTAAATTAACAGCATCA
AACTAACCCAACAAAACTAAAACAAATATTCTCATACTGGGTAATGTTCC
ATCAAGTGCAGCAAAGTAAAAAGCATAAAAACAAAAATAAAGGCATTTAA
AAAAGAAATGTTCCCTTTCCCTTCTTGTCTCCACCAATTTCAAAGTGCTT
GCACCTCTTGATGGGATGTTGAGACACATGCTTGCAACCCTGGCATTGGA
GCCTCAGCACAATCTTCTTGGTGGTCTTAGCCTTCTTGTGGAAAACAGGC
TTGGTCTGACCGCCATAGCCAGACTGCTTGCGATCATACCGTCTCTTCCC
TTGAGCAGCAAGACTGTCCTTGCCCTTCTTGTACTGTGTCACCTTGTGCA
AGGTGTGCTTTCTGCACTCCTTGCTCTTGCAGTAAGTCTTCTTAGTCTTG
GGAACATTCACCATGATGGCCGGCTGCGGCGACGACGAAAGAGCTCTTCG
TAACTTCCACCT
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