DN617905

Overview
NameDN617905
Unique NameDN617905
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length676
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617905_ssr550 microsatellite DN617905_ssr550:550..561. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2000 contig Csv1_Contig2000:25..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617905 vs. ExPASy Swiss-Prot
Match: C71DB_LOTJA (Cytochrome P450 71D11 (Fragment) OS=Lotus japonicus GN=CYP71D11 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.299e-13
Identity = 36/114 (31.58%), Postives = 65/114 (57.02%), Query Frame = 1
Query:  226 HKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNNKI 567
            H+K  +L+  YGP+  L LG  + ++VSS    K+V++  D TFA R   +   +  +G  DI +S YG  WR++RK    +++S   + + + +R++EVKN I+ + +    +
Sbjct:   41 HRKLRDLAKKYGPLMHLQLGEVIFIIVSSAEYAKEVMKTHDVTFASRPRSLFTDIVFYGSTDIGFSPYGDYWRQVRKICNVELLSMKRVQSLWPIREEEVKNLIQRIASEEGSV 154          
BLAST of DN617905 vs. ExPASy Swiss-Prot
Match: C99A1_SORBI (Cytochrome P450 CYP99A1 (Fragment) OS=Sorghum bicolor GN=CYP99A1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.451e-12
Identity = 36/111 (32.43%), Postives = 63/111 (56.76%), Query Frame = 1
Query:  208 LGTTDLHKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIR 540
            L T+  H    +L+  +GP+  L LG    VV+SSP+  ++V+RD+DTTFA R   +   +  +G  D++++ YG  WR LRK  + ++++   +    A+R  E  + +R
Sbjct:   43 LATSQPHVALRDLAMKHGPVMYLRLGQVDAVVISSPAAAQEVLRDKDTTFASRPSLLVADIILYGSMDMSFAPYGGNWRMLRKLCMSELLNTHKVRQLAAVRDSETLSLVR 153          
BLAST of DN617905 vs. ExPASy Swiss-Prot
Match: C98A2_SOYBN (Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 35/107 (32.71%), Postives = 60/107 (56.07%), Query Frame = 1
Query:  235 FTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNN 555
            F E +  YGPI  +W G+ L V+VS+  L K+V+++ D   A R    +    +  G D+ W++YGP + K+RK    ++ S   L+A   +R+ EV + +  +YN+
Sbjct:   52 FAEWAQSYGPIISVWFGSTLNVIVSNSELAKEVLKEHDQLLADRHRSRSAAKFSRDGKDLIWADYGPHYVKVRKVCTLELFSPKRLEALRPIREDEVTSMVDSVYNH 158          
BLAST of DN617905 vs. ExPASy Swiss-Prot
Match: C93B1_GLYEC (Licodione synthase OS=Glycyrrhiza echinata GN=CYP93B1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 44/146 (30.14%), Postives = 77/146 (52.74%), Query Frame = 1
Query:  223 LHKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNNKICKPIDIGELSISTLVCAMQNMLWGEALELKE 660
            LH+ F  LS  YGP+F L  G+ LCVV S+P   KQ+++  +  F  R    A    T+  + +A++ YG  WR ++K  + +++ + S++    LR QE    +R L +N  +  + ++I E  +      +  M+ GEA E ++
Sbjct:   53 LHQSFHNLSHRYGPLFSLNFGSVLCVVASTPHFAKQLLQTNELAFNCRIESTAVKKLTY-ESSLAFAPYGDYWRFIKKLSMNELLGSRSINNFQHLRAQETHQLLR-LLSNRARAFEAVNITEELLKLTNNVISIMMVGEAEEARD 196          
BLAST of DN617905 vs. ExPASy Swiss-Prot
Match: C75A1_PINTA (Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 42/138 (30.43%), Postives = 73/138 (52.90%), Query Frame = 1
Query:  223 LHKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNNKICKPIDIGELSISTLVCAMQNMLW 636
            LH+    L+  YGPI  L  G+   VVVSS    K  ++  D  FA R P   G    +   DIA+S YG  WRK+RK  V +++++  +++   +R++E+   I  ++  +      +++ + +IST   ++ N+LW
Sbjct:   62 LHRTLKNLAEKYGPILFLRFGSVPTVVVSSSEKAKHFLKTHDLIFASRPPTSVGKYFFYNFKDIAFSPYGDHWRKMRKICVLELLTSKRIESFKHVRQEELSAMIHSIWEESESGRIAVNVSK-AIST---SLANILW 195          
BLAST of DN617905 vs. ExPASy Swiss-Prot
Match: C71D7_SOLCH (Cytochrome P450 71D7 OS=Solanum chacoense GN=CYP71D7 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.312e-12
Identity = 37/104 (35.58%), Postives = 59/104 (56.73%), Query Frame = 1
Query:  226 HKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTI 537
            H+   +L+  YGP+  L LG    VVV+SP + KQV++  D  FA R   +A  +  +   DIA+S YG  WR++RK  + +++S  S+ +  ++R  EV   I
Sbjct:   53 HRVLRDLAEKYGPLMHLQLGEVSAVVVTSPEMAKQVLKTHDIAFASRPKLLAMDIICYNRRDIAFSPYGDYWRQMRKICIMEVLSAKSVRSFSSIRHDEVVRLI 156          
BLAST of DN617905 vs. ExPASy Swiss-Prot
Match: C71D6_SOLCH (Cytochrome P450 71D6 OS=Solanum chacoense GN=CYP71D6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.036e-11
Identity = 36/112 (32.14%), Postives = 64/112 (57.14%), Query Frame = 1
Query:  226 HKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNN 561
            H+   +L+  YGP+  L LG    VVV+SP + K+V++  D  FA R   +A  +  +   DIA+S YG  W+++RK  V +++S  S+ +  ++R  EV   I  + ++++
Sbjct:   53 HRVLRDLAKKYGPLMHLQLGEVSAVVVTSPDMAKEVLKTHDIAFASRPKLLAMDIICYDRCDIAFSPYGEYWKQMRKICVTEVLSAKSVRSFSSIRCDEVVRLIDSIQSSSS 164          
BLAST of DN617905 vs. ExPASy Swiss-Prot
Match: C84A1_ARATH (Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CYP84A1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.883e-11
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  226 HKKFTELSGVYGPIFKLWLGNKLCVVVSSPSLVKQVVRDQDTTFAYRDPPIAGLVATFGGNDIAWSNYGPEWRKLRKFFVGKMMSNASLDACYALRKQEVKNTIRDLYNNNNKICKPIDIGE 591
            H+    L+  YG +  L +G      VSSP + +QV++ QD+ F+ R   IA    T+   D+A+++YGP WR++RK  V K+ S    ++ +A  + EV   +R +  N   + KPI++GE
Sbjct:   61 HRGLANLAKKYGGLCHLRMGFLHMYAVSSPEVARQVLQVQDSVFSNRPATIAISYLTYDRADMAFAHYGPFWRQMRKVCVMKVFSRKRAES-WASVRDEVDKMVRSVSCN---VGKPINVGE 178          
The following BLAST results are available for this feature:
BLAST of DN617905 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
C71DB_LOTJA1.299e-1331.58Cytochrome P450 71D11 (Fragment) OS=Lotus japonicu... [more]
C99A1_SORBI2.451e-1232.43Cytochrome P450 CYP99A1 (Fragment) OS=Sorghum bico... [more]
C98A2_SOYBN3.201e-1232.71Cytochrome P450 98A2 OS=Glycine max GN=CYP98A2 PE=... [more]
C93B1_GLYEC7.130e-1230.14Licodione synthase OS=Glycyrrhiza echinata GN=CYP9... [more]
C75A1_PINTA7.130e-1230.43Cytochrome P450 750A1 OS=Pinus taeda GN=CYP750A1 P... [more]
C71D7_SOLCH9.312e-1235.58Cytochrome P450 71D7 OS=Solanum chacoense GN=CYP71... [more]
C71D6_SOLCH6.036e-1132.14Cytochrome P450 71D6 OS=Solanum chacoense GN=CYP71... [more]
C84A1_ARATH7.883e-1133.61Cytochrome P450 84A1 OS=Arabidopsis thaliana GN=CY... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01N13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617905 ID=DN617905; Name=DN617905; organism=Citrus sinensis; type=EST; length=676bp
AATTCATTCTGAAACACTAAAACTAAATAATCGAATATGGGTTTGCGGGT
CAATGATGCCAGAAGCAATGAGAGTGCAATTATCACTTGTTTAGTTTCTG
TGCTTGCCGTGGTTTACTTCGCATGGAATGTGAAAAAATCAAGGAAAGCA
AATGCTAAACTTCCACCAGGACCTCGCGGCTTGCCTGTAGTCGGATACCT
CCCATTTCTCGGAACTACTGACTTGCACAAGAAATTCACGGAATTATCCG
GAGTTTATGGTCCGATCTTCAAGCTCTGGCTCGGAAATAAATTATGTGTA
GTGGTGAGCTCACCTTCCCTAGTTAAACAAGTGGTTCGTGATCAAGATAC
AACATTCGCATACCGTGACCCGCCGATCGCTGGACTAGTGGCCACCTTTG
GTGGCAATGATATTGCATGGTCCAATTACGGTCCCGAATGGAGAAAGTTG
CGCAAATTTTTTGTGGGCAAGATGATGAGTAACGCAAGCCTTGATGCTTG
TTATGCTCTAAGAAAACAAGAGGTTAAAAATACTATCAGGGATTTGTATA
ACAACAACAACAAAATTTGCAAGCCCATTGACATTGGTGAATTGTCGATT
TCAACACTGGTATGTGCTATGCAGAACATGCTGTGGGGTGAAGCGCTTGA
ATTAAAAGAGAAAGGGACCACTATTC
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