DN617901

Overview
NameDN617901
Unique NameDN617901
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length592
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2553 contig Csv1_Contig2553:108..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617901 vs. ExPASy Swiss-Prot
Match: PHF5_ARATH (Uncharacterized protein At1g07170/At2g30000 OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 2.287e-58
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 1
Query:   67 LLCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 372
            ++CRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct:    9 IMCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110          
BLAST of DN617901 vs. ExPASy Swiss-Prot
Match: PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.175e-54
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 1
Query:   67 LLCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 372
            + CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    9 IFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of DN617901 vs. ExPASy Swiss-Prot
Match: PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.175e-54
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 1
Query:   67 LLCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 372
            + CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    9 IFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of DN617901 vs. ExPASy Swiss-Prot
Match: PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.175e-54
Identity = 92/102 (90.20%), Postives = 98/102 (96.08%), Query Frame = 1
Query:   67 LLCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 372
            + CRKQ G+AIGRLCEKCDGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:    9 IFCRKQAGVAIGRLCEKCDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110          
BLAST of DN617901 vs. ExPASy Swiss-Prot
Match: PHF5_DROME (Uncharacterized protein CG9548 OS=Drosophila melanogaster GN=CG9548 PE=3 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.436e-52
Identity = 89/101 (88.12%), Postives = 96/101 (95.05%), Query Frame = 1
Query:   67 LLCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKK 369
            + CRKQPG+AIGRLCEK DGKCVICDSYVRPCTLVR+CDECNYGS+QGRCVICGG G+SDAYYCK CT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFK+
Sbjct:    9 IFCRKQPGVAIGRLCEKDDGKCVICDSYVRPCTLVRICDECNYGSYQGRCVICGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKQ 109          
BLAST of DN617901 vs. ExPASy Swiss-Prot
Match: INI1_SCHPO (Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyces pombe GN=ini1 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.809e-40
Identity = 66/97 (68.04%), Postives = 83/97 (85.57%), Query Frame = 1
Query:   67 LLCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKY 357
            +LCR+QPGI +G+LCE+CD KC ICDS+VRP TLVR+CDEC +GS Q RC+ICG  G+SD YYC ECT+ E DRDGCP+++NLGS++TD FYERKK+
Sbjct:    9 VLCRRQPGITVGKLCERCDEKCPICDSHVRPTTLVRICDECAFGSSQDRCIICGAPGVSDCYYCSECTRMEYDRDGCPRVINLGSSRTDWFYERKKF 105          
BLAST of DN617901 vs. ExPASy Swiss-Prot
Match: RDS3_YEAST (Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cerevisiae GN=RDS3 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.001e-29
Identity = 55/97 (56.70%), Postives = 72/97 (74.23%), Query Frame = 1
Query:   67 LLCRKQPGIAIGRLCEKCDGKCVICDSYVRPCTLVRVCDECNYGSFQGRCVICG-GVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKK 354
            ++C KQPG+  G LCEKCDGKC ICDSYVRP   VRVC+ C++G     C+IC   VG++DA+YC EC +  KD+DGCP+I+NLGS + D  +E+KK
Sbjct:    9 IMCLKQPGVQTGLLCEKCDGKCPICDSYVRPKRKVRVCENCSFGKQAKNCIICNLNVGVNDAFYCWECCRLGKDKDGCPRILNLGSNRLDRHFEKKK 105          
The following BLAST results are available for this feature:
BLAST of DN617901 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
PHF5_ARATH2.287e-5897.06Uncharacterized protein At1g07170/At2g30000 OS=Ara... [more]
PHF5A_RAT1.175e-5490.20PHD finger-like domain-containing protein 5A OS=Ra... [more]
PHF5A_MOUSE1.175e-5490.20PHD finger-like domain-containing protein 5A OS=Mu... [more]
PHF5A_HUMAN1.175e-5490.20PHD finger-like domain-containing protein 5A OS=Ho... [more]
PHF5_DROME1.436e-5288.12Uncharacterized protein CG9548 OS=Drosophila melan... [more]
INI1_SCHPO2.809e-4068.04Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyc... [more]
RDS3_YEAST1.001e-2956.70Pre-mRNA-splicing factor RDS3 OS=Saccharomyces cer... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01N11_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617901 ID=DN617901; Name=DN617901; organism=Citrus sinensis; type=EST; length=592bp
CTGATTTGAAGCAATCTCAACATTTTCTTCTCCAAGCAAGCGGACGTTAG
CATCTGGACTTCGAGTCTTCTGTGCAGGAAGCAACCAGGGATAGCCATTG
GAAGGCTCTGTGAGAAATGTGATGGGAAGTGTGTGATTTGTGATTCCTAT
GTGCGTCCTTGCACCCTTGTGCGAGTCTGTGATGAATGCAATTATGGTTC
CTTTCAGGGTCGATGTGTCATCTGTGGAGGGGTGGGAATCTCTGATGCAT
ACTACTGCAAAGAGTGCACACAGCAAGAGAAGGACAGGGATGGTTGTCCA
AAAATTGTCAATTTGGGCAGTGCGAAAACGGACCTGTTTTACGAACGTAA
GAAATATGGTTTTAAGAAAAGATGATGGTAGCCCGCTAATTGTTTTTGTA
GCAAGAGCATTTTATCTACCATTATATACAATTCTTGACGATGATGGATT
TTGAGGTGTTTGAAGTTGGAACTAAGATGTGTTGGATCTGTAACCATGAG
TCATTAGAGTGACTTATTATCTTAACCTCTATTCATTACTGAAGCACCTG
CTTATATTCTAATGGGTTCGGATTGTATTTGAACATATCTGT
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