DN617900

Overview
NameDN617900
Unique NameDN617900
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2553 contig Csv1_Contig2553:310..887. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617900 vs. ExPASy Swiss-Prot
Match: PHF5_ARATH (Uncharacterized protein At1g07170/At2g30000 OS=Arabidopsis thaliana GN=At1g07170 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 3.034e-28
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = -3 
Query:  409 QGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 576
            QGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR
Sbjct:   55 QGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 110
[Close]
BLAST of DN617900 vs. ExPASy Swiss-Prot
Match: PHF5A_RAT (PHD finger-like domain-containing protein 5A OS=Rattus norvegicus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.709e-26
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = -3 
Query:  409 QGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 576
            QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:   55 QGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110
[Close]
BLAST of DN617900 vs. ExPASy Swiss-Prot
Match: PHF5A_MOUSE (PHD finger-like domain-containing protein 5A OS=Mus musculus GN=Phf5a PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.709e-26
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = -3 
Query:  409 QGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 576
            QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:   55 QGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110
[Close]
BLAST of DN617900 vs. ExPASy Swiss-Prot
Match: PHF5A_HUMAN (PHD finger-like domain-containing protein 5A OS=Homo sapiens GN=PHF5A PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.709e-26
Identity = 52/56 (92.86%), Postives = 54/56 (96.43%), Query Frame = -3 
Query:  409 QGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKKR 576
            QGRCVICGG G+SDAYYCKECT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFKKR
Sbjct:   55 QGRCVICGGPGVSDAYYCKECTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKKR 110
[Close]
BLAST of DN617900 vs. ExPASy Swiss-Prot
Match: PHF5_DROME (Uncharacterized protein CG9548 OS=Drosophila melanogaster GN=CG9548 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.558e-24
Identity = 49/55 (89.09%), Postives = 52/55 (94.55%), Query Frame = -3 
Query:  412 QGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKYGFKK 576
            QGRCVICGG G+SDAYYCK CT QEKDRDGCPKIVNLGS+KTDLFYERKKYGFK+
Sbjct:   55 QGRCVICGGPGVSDAYYCKSCTIQEKDRDGCPKIVNLGSSKTDLFYERKKYGFKQ 109
[Close]
BLAST of DN617900 vs. ExPASy Swiss-Prot
Match: INI1_SCHPO (Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyces pombe GN=ini1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.410e-17
Identity = 34/51 (66.67%), Postives = 43/51 (84.31%), Query Frame = -3 
Query:  424 QGRCVICGGVGISDAYYCKECTQQEKDRDGCPKIVNLGSAKTDLFYERKKY 576
            Q RC+ICG  G+SD YYC ECT+ E DRDGCP+++NLGS++TD FYERKK+
Sbjct:   55 QDRCIICGAPGVSDCYYCSECTRMEYDRDGCPRVINLGSSRTDWFYERKKF 105
The following BLAST results are available for this feature:
BLAST of DN617900 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PHF5_ARATH3.034e-28100.00Uncharacterized protein At1g07170/At2g30000 OS=Ara... [more]
PHF5A_RAT3.709e-2692.86PHD finger-like domain-containing protein 5A OS=Ra... [more]
PHF5A_MOUSE3.709e-2692.86PHD finger-like domain-containing protein 5A OS=Mu... [more]
PHF5A_HUMAN3.709e-2692.86PHD finger-like domain-containing protein 5A OS=Ho... [more]
PHF5_DROME1.558e-2489.09Uncharacterized protein CG9548 OS=Drosophila melan... [more]
INI1_SCHPO2.410e-1766.67Pre-mRNA-splicing factor ini1 OS=Schizosaccharomyc... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01N11_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617900 ID=DN617900; Name=DN617900; organism=Citrus sinensis; type=EST; length=578bp
TTTTTTTTTTTTTTTTTACTCTTGAACTAAGTCATCAAATTTCCTTAATA
GCAAAATAAGATTGACCGTGGCCAAACAAAGTACACATAACCATCAACTG
ATCCACTACTGAGATCACTCATGCTTATTAAACTGAAAACCAAGTCCTAA
TAGAAACAAATGAGGTTACTTAAGCAGAAGTTTCCATTACAGATATGTTC
AAATACAATCCGAACCCATTAGAATATAAGCAGGTGCTTCAGTAATGAAT
AGAGGTTAAGATAATAAGTCACTCTAATGACTCATGGTTACAGATCCAAC
ACATCTTAGTTCCAACTTCAAACACCTCAAAATCCATCATCGTCAAGAAT
TGTATATAATGGTAGATAAAATGCTCTTGCTACAAAAACAATTAGCGGGC
TACCATCATCTTTTCTTAAAACCATATTTCTTACGTTCGTAAAACAGGTC
CGTTTTCGCACTGCCCAAATTGACAATTTTTGGACAACCATCCCTGTCCT
TCTCTTGCTGTGTGCACTCTTTGCAGTAGTATGCATCAGAGATTCCCACC
CCTCCACAGATGACACATCGACCCTGAA
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