DN617899

Overview
NameDN617899
Unique NameDN617899
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length627
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN4_ARATH (5'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN=XRN4 PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 6.534e-62
Identity = 113/165 (68.48%), Postives = 126/165 (76.36%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627
            MGVPAFYRWLADRYP SI DVVEE+P   G G   PVD+++PNPNG EFDNLYLDMNGIIHPCFHP+GKPAP +YDDVFKS+F+YIDH+F LVRPRK+LYLAIDGVAPRAKMNQQR+                          G++LSAKEK ETCDSNVITPGT
Sbjct:    1 MGVPAFYRWLADRYPKSISDVVEEEPTDGGRGDLIPVDITRPNPNGFEFDNLYLDMNGIIHPCFHPEGKPAPATYDDVFKSMFEYIDHLFTLVRPRKILYLAIDGVAPRAKMNQQRSRRFRAAKDAAEAEAEEERLRKDFEMEGQILSAKEKAETCDSNVITPGT 165          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN3_ARATH (5'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN=XRN3 PE=2 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.042e-51
Identity = 94/165 (56.97%), Postives = 120/165 (72.73%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627
            MGVP+FYRWLA++YPL + DV+EE+P V+ EG+  PVD SKPNPN +E+DNLYLDMNGIIHPCFHP+ +P+PT++++VF+ +FDYID +F++VRPRKLLY+AIDGVAPRAKMNQQR+                          G+ L  K   +  DSNVITPGT
Sbjct:    1 MGVPSFYRWLAEKYPLLVADVIEEEP-VEIEGIKIPVDTSKPNPNNLEYDNLYLDMNGIIHPCFHPEDRPSPTTFEEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFRSAKDASDAAAEEERLREEFEREGRRLPPKVDSQVFDSNVITPGT 164          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_ARATH (5'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN=XRN2 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.189e-51
Identity = 96/166 (57.83%), Postives = 118/166 (71.08%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDP-QVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627
            MGVP+FYRWL  RYPL+I +V+EE+P +V+G GV  P+D SKPNPNG E+DNLYLDMNGIIHPCFHP+ KP+PT++ +VF+ +FDYID +F++VRPRKLL++AIDGVAPRAKMNQQR                           GK L  K   +  DSNVITPGT
Sbjct:    1 MGVPSFYRWLIQRYPLTIQEVIEEEPLEVNGGGVTIPIDSSKPNPNGYEYDNLYLDMNGIIHPCFHPEDKPSPTTFTEVFQCMFDYIDRLFVMVRPRKLLFMAIDGVAPRAKMNQQRARRFRAAKDAAEAAAEEEQLREEFEREGKKLPPKVDSQVFDSNVITPGT 166          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_PONAB (5'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE=2 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.479e-45
Identity = 91/165 (55.15%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627
            MGVPAF+RWL+ +YP  IV+ VEE P+ +  GV  PVD SKPNPN +EFDNLYLDMNGIIHPC HP+ KPAP + D++  +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+                          G  L  +E  E  DSN ITPGT
Sbjct:    1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGT 164          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_HUMAN (5'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 9.479e-45
Identity = 91/165 (55.15%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627
            MGVPAF+RWL+ +YP  IV+ VEE P+ +  GV  PVD SKPNPN +EFDNLYLDMNGIIHPC HP+ KPAP + D++  +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+                          G  L  +E  E  DSN ITPGT
Sbjct:    1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGT 164          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_MOUSE (5'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.238e-44
Identity = 91/165 (55.15%), Postives = 110/165 (66.67%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627
            MGVPAF+RWL+ +YP  IV+ VEE P+ +  GV  PVD SKPNPN +EFDNLYLDMNGIIHPC HP+ KPAP + D++  +IF+YID +F +VRPR+LLY+AIDGVAPRAKMNQQR+                          G  L  +E  E  DSN ITPGT
Sbjct:    1 MGVPAFFRWLSRKYPSIIVNCVEEKPK-ECNGVKIPVDASKPNPNDVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAVEKQRVREEILAKGGFLPPEEIKERFDSNCITPGT 164          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CHICK (5'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.788e-43
Identity = 90/165 (54.55%), Postives = 109/165 (66.06%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPETCDSNVITPGT 627
            MGVPAF+RWL+ +YP  IV+ VEE  + +  GV   VD SKPNPN +EFDNLYLDMNGIIHPC HP+ KPAP + D++  +IF+YID IF +VRPR+LLY+AIDGVAPRAKMNQQR+                          G +L  +E  E  DSN ITPGT
Sbjct:    1 MGVPAFFRWLSRKYPSIIVNCVEEKAK-ECNGVKASVDTSKPNPNEVEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFEYIDRIFNIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEGMEAAEEKQKIRQEILAKGGILPPEEVKERFDSNCITPGT 164          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CAEEL (5'-3' exoribonuclease 2 homolog OS=Caenorhabditis elegans GN=xrn-2 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 7.510e-42
Identity = 87/166 (52.41%), Postives = 108/166 (65.06%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPET-CDSNVITPGT 627
            MGVPAF+RWL  +YP ++V+   ED Q D +G   PVD ++PNPN  EFDNLYLDMNGIIHPC HP+ +PAP + D++F  IF+YID I+ +VRPR+LLY+AIDGVAPRAKMNQQR+                          G  +  K+K E   DSN ITPGT
Sbjct:    1 MGVPAFFRWLTKKYPATVVNA-NEDRQRDQDGNRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYIDRIYSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKEASIEEQRNRLMAEGIAVPPKKKEEAHFDSNCITPGT 165          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_CAEBR (5'-3' exoribonuclease 2 homolog OS=Caenorhabditis briggsae GN=xrn-2 PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 6.358e-41
Identity = 87/168 (51.79%), Postives = 107/168 (63.69%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPVDVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXGKLLSAKEKPET---CDSNVITPGT 627
            MGVPAF+RWL  +YP ++V+   ED Q   +G   PVD ++PNPN  EFDNLYLDMNGIIHPC HP+ +PAP + D++F  IF+YID IF +VRPR+LLY+AIDGVAPRAKMNQQR+                          G  +  K+K E     DSN ITPGT
Sbjct:    1 MGVPAFFRWLTKKYPATVVNA-NEDRQRGVDGRRVPVDCTQPNPNFQEFDNLYLDMNGIIHPCTHPEDRPAPKNEDEMFALIFEYIDRIFSIVRPRRLLYMAIDGVAPRAKMNQQRSRRFRASKEMAEKAASIEEQRRRLIAEGIAVPQKKKDEEEAHFDSNCITPGT 167          
BLAST of DN617899 vs. ExPASy Swiss-Prot
Match: XRN2_DROME (5'-3' exoribonuclease 2 homolog OS=Drosophila melanogaster GN=Rat1 PE=1 SV=2)

HSP 1 Score: 162.54 bits (410), Expect = 1.566e-39
Identity = 89/168 (52.98%), Postives = 109/168 (64.88%), Query Frame = 1
Query:  133 MGVPAFYRWLADRYPLSIVDVVEEDPQVDGEGVARPV--DVSKPNPNGMEFDNLYLDMNGIIHPCFHPDGKPAPTSYDDVFKSIFDYIDHIFLLVRPRKLLYLAIDGVAPRAKMNQQRTXXXXXXXXXXXXXXXXXXXXXXXXXXG-KLLSAKEKPETCDSNVITPGT 627
            MGVPAF+RWL+ +YP  I++   E+ QVD +   R +  D + PNPNG+EFDNLYLDMNGIIHPC HP+ KPAP + D++  +IF+ ID +F +VRPRKLLY+AIDGVAPRAKMNQQR+                          G KL   KEK E  DSN ITPGT
Sbjct:    1 MGVPAFFRWLSRKYPSVIIEC-NENKQVDAD-TGRNIYEDPTLPNPNGIEFDNLYLDMNGIIHPCTHPEDKPAPKNEDEMMVAIFECIDRLFGIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRAAKETTEKRLEIARIREELLSRGCKLPPEKEKGEHFDSNCITPGT 166          
The following BLAST results are available for this feature:
BLAST of DN617899 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
XRN4_ARATH6.534e-6268.485'-3' exoribonuclease 4 OS=Arabidopsis thaliana GN... [more]
XRN3_ARATH3.042e-5156.975'-3' exoribonuclease 3 OS=Arabidopsis thaliana GN... [more]
XRN2_ARATH5.189e-5157.835'-3' exoribonuclease 2 OS=Arabidopsis thaliana GN... [more]
XRN2_PONAB9.479e-4555.155'-3' exoribonuclease 2 OS=Pongo abelii GN=XRN2 PE... [more]
XRN2_HUMAN9.479e-4555.155'-3' exoribonuclease 2 OS=Homo sapiens GN=XRN2 PE... [more]
XRN2_MOUSE1.238e-4455.155'-3' exoribonuclease 2 OS=Mus musculus GN=Xrn2 PE... [more]
XRN2_CHICK1.788e-4354.555'-3' exoribonuclease 2 OS=Gallus gallus GN=XRN2 P... [more]
XRN2_CAEEL7.510e-4252.415'-3' exoribonuclease 2 homolog OS=Caenorhabditis ... [more]
XRN2_CAEBR6.358e-4151.795'-3' exoribonuclease 2 homolog OS=Caenorhabditis ... [more]
XRN2_DROME1.566e-3952.985'-3' exoribonuclease 2 homolog OS=Drosophila mela... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01N10_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617899 ID=DN617899; Name=DN617899; organism=Citrus sinensis; type=EST; length=627bp
CTCATTTTCTATTTTCCGTCTCTAGTGCACTCATCTTCCTATTTTCTAAA
TTTCTAATTTAATTTTAGTTTCATTAAAAAAAATTATTATTTCAACCGAA
CCGTACGGATCCGGACCAAAGAACTCTGAGCCATGGGAGTGCCGGCGTTT
TACCGGTGGTTAGCGGATCGCTATCCGCTGTCGATTGTTGACGTCGTGGA
GGAGGATCCTCAAGTTGACGGCGAAGGAGTCGCCAGACCTGTTGACGTTT
CGAAACCTAACCCTAACGGCATGGAATTCGATAATTTGTATTTGGATATG
AACGGAATTATTCATCCTTGTTTTCACCCCGATGGCAAGCCTGCCCCTAC
CTCGTATGATGATGTATTTAAATCTATCTTTGATTACATTGATCATATTT
TCTTATTGGTTCGTCCGAGAAAGCTTCTCTATTTGGCAATTGATGGGGTG
GCGCCTAGAGCTAAAATGAATCAGCAACGTACTCGACGTTTCAGAGCTGC
AAAAGATGCTGCTGAGGCTGAAGCTGAAGAGGAAAGGCTGAGGAAGGAAT
TTGAAGAAGCAGGGAAACTCTTATCTGCTAAAGAAAAACCTGAAACATGT
GATTCAAATGTTATTACTCCAGGCACT
back to top