DN617896

Overview
NameDN617896
Unique NameDN617896
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA_SOLTU (Mitochondrial-processing peptidase subunit alpha OS=Solanum tuberosum GN=MPP PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 6.941e-64
Identity = 116/154 (75.32%), Postives = 140/154 (90.91%), Query Frame = -3
Query:  115 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYE 576
            G PGKGMYSRLY RVLN++PQ+ +FSAFS+IYN++G+FGIQGTT SDF  +A+D+A +ELI+VA P EVDQVQL+RAKQ+TKSAILMNLESRMV SEDIGRQ+LTYGER PVEHFLK ++ V+AKDIASV QKL+SSPLTMASYGDV+++PSY+
Sbjct:  342 GGPGKGMYSRLYLRVLNQYPQIHAFSAFSSIYNNTGLFGIQGTTSSDFGPQAVDVAVKELIAVANPSEVDQVQLNRAKQATKSAILMNLESRMVASEDIGRQLLTYGERNPVEHFLKAIDAVSAKDIASVVQKLISSPLTMASYGDVLSLPSYD 495          

HSP 2 Score: 22.3274 bits (46), Expect = 6.941e-64
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  337 GSFSAGGPGK 346          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA1_ARATH (Probable mitochondrial-processing peptidase subunit alpha-1 OS=Arabidopsis thaliana GN=At1g51980 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 1.020e-49
Identity = 96/154 (62.34%), Postives = 125/154 (81.17%), Query Frame = -3
Query:  115 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYE 576
            G PGKGM+S LYRRVLNE+ +VQS +AF++I+N +G+FGI G +   F +KAI+LAA+EL  VA  G+V+Q  LDRAK +TKSA+LMNLESRM+ +EDIGRQ+LTYGERKPV+ FLK+V+ +T KDIA    K++S PLTM S+GDV+ VPSY+
Sbjct:  344 GGPGKGMHSWLYRRVLNEYQEVQSCTAFTSIFNDTGLFGIYGCSSPQFAAKAIELAAKELKDVAG-GKVNQAHLDRAKAATKSAVLMNLESRMIAAEDIGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSKVISKPLTMGSFGDVLAVPSYD 496          

HSP 2 Score: 22.3274 bits (46), Expect = 1.020e-49
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  339 GSFSAGGPGK 348          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA2_ARATH (Probable mitochondrial-processing peptidase subunit alpha-2 OS=Arabidopsis thaliana GN=At3g16480 PE=1 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 5.427e-48
Identity = 92/154 (59.74%), Postives = 124/154 (80.52%), Query Frame = -3
Query:  115 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYE 576
            G PGKGM+S LY R+LN+  Q QS +AF++++N++G+FGI G T  +F S+ I+L A E+ +VA  G+V+Q  LDRAK +TKSAILMNLESRM+ +EDIGRQ+LTYGERKPV+ FLKTV+ +T KDIA    K+++ PLTMA++GDV+NVPSY+
Sbjct:  340 GGPGKGMHSWLYLRLLNQHQQFQSCTAFTSVFNNTGLFGIYGCTSPEFASQGIELVASEMNAVAD-GKVNQKHLDRAKAATKSAILMNLESRMIAAEDIGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSKVITKPLTMATFGDVLNVPSYD 492          

HSP 2 Score: 22.3274 bits (46), Expect = 5.427e-48
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  335 GSFSAGGPGK 344          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA_NEUCR (Mitochondrial-processing peptidase subunit alpha OS=Neurospora crassa GN=mpp PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 3.336e-23
Identity = 57/148 (38.51%), Postives = 86/148 (58.11%), Query Frame = -3
Query:  142 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATP---GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYG 576
            G PGKGMYSRLY  VLN+   V+S  AF++ Y  SG+FGI  +         + +  REL ++ T      + ++++ RAK   +S++LMNLESRMV  ED+GRQV  +G + PV    + +  +T KD+  VA++++      A  G
Sbjct:  392 GGPGKGMYSRLYTNVLNQHGWVESCVAFNHSYTDSGLFGIAASCYPGRTLPMLQVMCRELHALTTDHGYSALGELEVSRAKNQLRSSLLMNLESRMVELEDLGRQVQVHGRKIPVREMTRRINELTVKDLRRVAKRVVGGMANNAGQG 539          

HSP 2 Score: 22.3274 bits (46), Expect = 3.336e-23
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  387 GSFSAGGPGK 396          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA_PONAB (Mitochondrial-processing peptidase subunit alpha OS=Pongo abelii GN=PMPCA PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 4.348e-23
Identity = 56/154 (36.36%), Postives = 89/154 (57.79%), Query Frame = -3
Query:  115 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYE 576
            G PGKGM+SRLY  VLN    + + +++ + Y  +G+  I  +     V + +++  +E I ++  G VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +D+  VA K+L     +A+ GD+ ++P+YE
Sbjct:  353 GGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMS--GTVDAVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYE 504          

HSP 2 Score: 22.3274 bits (46), Expect = 4.348e-23
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  348 GSFSAGGPGK 357          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA_HUMAN (Mitochondrial-processing peptidase subunit alpha OS=Homo sapiens GN=PMPCA PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.657e-23
Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = -3
Query:  115 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYE 576
            G PGKGM+SRLY  VLN    + + +++ + Y  +G+  I  +     V + +++  +E I +   G VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +D+  VA K+L     +A+ GD+ ++P+YE
Sbjct:  353 GGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMG--GTVDTVELERAKTQLTSMLMMNLESRPVIFEDVGRQVLATRSRKLPHELCTLIRNVKPEDVKRVASKMLRGKPAVAALGDLTDLPTYE 504          

HSP 2 Score: 22.3274 bits (46), Expect = 5.657e-23
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  348 GSFSAGGPGK 357          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA_YEAST (Mitochondrial-processing peptidase subunit alpha OS=Saccharomyces cerevisiae GN=MAS2 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.666e-23
Identity = 65/186 (34.95%), Postives = 106/186 (56.99%), Query Frame = -3
Query:   73 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEV--DQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMA----------------SYGDVINVPSYE*FGF*ASSSFKYDA 576
            G PGKGMYSRLY  VLN++  V++  AF++ Y+ SG+FGI  +       +A+++ A+++ +     ++   + ++ RAK   KS++LMNLES++V  ED+GRQVL +G + PV   +  +E +   DI+ VA+ + +  +  A                S+GDV NV   + +G   SSS K D+
Sbjct:  292 GGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENV--LKAYGLGNSSSSKNDS 475          

HSP 2 Score: 22.3274 bits (46), Expect = 5.666e-23
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  287 GSFSAGGPGK 296          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA_BOVIN (Mitochondrial-processing peptidase subunit alpha OS=Bos taurus GN=PMPCA PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 9.577e-23
Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = -3
Query:  115 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYE 576
            G PGKGM++RLY  VLN    + + +++ + Y  +G+  I  +     V + +++  RE + +A  G VD V+L+RAK    S ++MNLE+R V+ ED+GRQVL    RK        +  V  +DI  VA K+L     +A+ GD+  +P+YE
Sbjct:  353 GGPGKGMFTRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIVTREFVLMA--GTVDVVELERAKTQLTSMLMMNLEARPVIFEDVGRQVLATRSRKLPHELCALIRDVKPEDIKRVASKMLRGKPAVAALGDLSELPAYE 504          

HSP 2 Score: 22.3274 bits (46), Expect = 9.577e-23
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  348 GSFSAGGPGK 357          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA_BLAEM (Mitochondrial-processing peptidase subunit alpha OS=Blastocladiella emersonii PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 1.624e-22
Identity = 55/146 (37.67%), Postives = 85/146 (58.22%), Query Frame = -3
Query:  139 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGD 576
            G PGKGMYSRLY  VLN +  ++S +AF + Y+ + +FGI  +    F     ++ A E + +A    +   ++ RAK   KS++LMNLES+++  EDIGRQVL   +R      +  +  VT  D+  VA+ L++ P TM + G+
Sbjct:  295 GGPGKGMYSRLYTNVLNRYRWMESCAAFQHAYSSTSLFGISASCVPSFNPHLCNVLAGEFVHMAR--NLSDEEVARAKNQLKSSLLMNLESQVITVEDIGRQVLAQNQRLEPLELVNNISAVTRDDLVRVAEALVAKPPTMVAVGE 438          

HSP 2 Score: 21.1718 bits (43), Expect = 1.624e-22
Identity = 8/10 (80.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            G+FSAGGP K
Sbjct:  290 GAFSAGGPGK 299          
BLAST of DN617896 vs. ExPASy Swiss-Prot
Match: MPPA_RAT (Mitochondrial-processing peptidase subunit alpha OS=Rattus norvegicus GN=Pmpca PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.571e-22
Identity = 56/154 (36.36%), Postives = 87/154 (56.49%), Query Frame = -3
Query:  115 GAPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYE 576
            G PGKGM+SRLY  VLN    + + +++ + Y  +G+  I  +     V + +++  +E I +     VD V+L+RAK    S ++MNLESR V+ ED+GRQVL    RK        +  V  +DI  VA K+L     +A+ GD+ ++P+YE
Sbjct:  352 GGPGKGMFSRLYLNVLNRHHWMYNATSYHHSYEDTGLLCIHASADPRQVREMVEIITKEFILMGRT--VDLVELERAKTQLMSMLMMNLESRPVIFEDVGRQVLATHSRKLPHELCTLIRNVKPEDIKRVASKMLRGKPAVAALGDLTDLPTYE 503          

HSP 2 Score: 22.3274 bits (46), Expect = 3.571e-22
Identity = 9/10 (90.00%), Postives = 9/10 (90.00%), Query Frame = -2
Query:  563 GSFSAGGPWK 592
            GSFSAGGP K
Sbjct:  347 GSFSAGGPGK 356          
The following BLAST results are available for this feature:
BLAST of DN617896 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
MPPA_SOLTU6.941e-6475.32Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA1_ARATH1.020e-4962.34Probable mitochondrial-processing peptidase subuni... [more]
MPPA2_ARATH5.427e-4859.74Probable mitochondrial-processing peptidase subuni... [more]
MPPA_NEUCR3.336e-2338.51Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_PONAB4.348e-2336.36Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_HUMAN5.657e-2336.36Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_YEAST5.666e-2334.95Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_BOVIN9.577e-2336.36Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_BLAEM1.624e-2237.67Mitochondrial-processing peptidase subunit alpha O... [more]
MPPA_RAT3.571e-2236.36Mitochondrial-processing peptidase subunit alpha O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01N09_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617896 ID=DN617896; Name=DN617896; organism=Citrus sinensis; type=EST; length=593bp
GGATAATTTCTAGGAACAAACTACAAAAGAATATGAGAAATATTTCTAGG
AGGCAATTAAGTTTGTCAATACAGCATCATATTTAAAACTGCTGCTTGCT
TAAAACCCAAATTATTCATAGCTTGGGACATTGATGACATCTCCATATGA
TGCCATTGTGAGAGGAGATGAAAGAAGCTTCTGTGCTACGGAAGCAATAT
CCTTTGCTGTAACTCCTTCCACAGTCTTCAAGAAATGCTCCACGGGTTTC
CTCTCACCATATGTCAGAACTTGTCTACCTATGTCTTCGGAAACAACCAT
TCTTGATTCCAAATTCATCAAAATAGCTGACTTGGTTGACTGTTTGGCGC
GGTCTAGCTGTACTTGATCAACTTCTCCTGGAGTTGCCACAGAAATAAGC
TCCCTCGCTGCTAAATCAATAGCTTTTGATACGAAATCAGAGCCAGTTGT
ACCCTGGATTCCAAACATGCCAGAATGATTGTAGATGTTGCTGAATGCTG
AAAAGGACTGAACTTGCGGGAACTCATTCAAAACACGACGATACAGCCTT
GAGTACATTCCTTTTCCAGGGGCCCCCAGCTGAGAATGATCCA
back to top