DN617890

Overview
NameDN617890
Unique NameDN617890
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4105 contig Csv1_Contig4105:577..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7B_ARATH (Proteasome subunit beta type-7-B OS=Arabidopsis thaliana GN=PBB2 PE=1 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 1.782e-48
Identity = 93/114 (81.58%), Postives = 107/114 (93.86%), Query Frame = -3
Query:  148 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE-GGDAMEE 486
            LPFATMGSGSLAAM++FE+KYKEGLT+DEGI+LV +AIC GIFNDLGSGSNVD+CVITKGHKEYLRN++ PNPRT+V++KGYSF KKTEVLLTKITPL ERVE+VE  G+AMEE
Sbjct:  161 LPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAEAICSGIFNDLGSGSNVDICVITKGHKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLERVEIVEVAGEAMEE 274          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7A_ARATH (Proteasome subunit beta type-7-A OS=Arabidopsis thaliana GN=PBB1 PE=1 SV=2)

HSP 1 Score: 189.504 bits (480), Expect = 6.771e-48
Identity = 90/113 (79.65%), Postives = 106/113 (93.81%), Query Frame = -3
Query:  148 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVEGGDAMEE 486
            LPFATMGSGSLAAM++FE+KYKEGLT+DEGI+LV ++IC GIFNDLGSGSNVD+CVITKG+KEYLRN++ PNPRT+V++KGYSF KKTEVLLTKITPL ERVE+ E G+AMEE
Sbjct:  161 LPFATMGSGSLAAMSVFEAKYKEGLTRDEGIKLVAESICSGIFNDLGSGSNVDICVITKGNKEYLRNYMEPNPRTYVSSKGYSFTKKTEVLLTKITPLLERVEITEVGEAMEE 273          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7_DICDI (Proteasome subunit beta type-7 OS=Dictyostelium discoideum GN=psmB7 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.422e-21
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = -3
Query:  175 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEV 486
            LP+ TMGSGSLAAMA+FE+KYK  +TK+E I LV +AI  GIFNDLGSGSNVDV VI       LRN+  PN R F N         T VL   I PL  +V +
Sbjct:  156 LPYVTMGSGSLAAMAVFEAKYKNDMTKEEAIALVAEAISSGIFNDLGSGSNVDVTVIEPSGVTVLRNYQTPNERKFRNNPYIFKQGTTPVLKQDIAPLSTKVVI 259          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7_HUMAN (Proteasome subunit beta type-7 OS=Homo sapiens GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 4.573e-20
Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = -3
Query:  169 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE 486
            LP+ TMGSGSLAAMA+FE K++  + ++E   LV +AI  GIFNDLGSGSN+D+CVI+K   ++LR + +PN +     +       T VL  KITPL   +EV+E
Sbjct:  165 LPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDLCVISKNKLDFLRPYTVPNKKGTRLGRYRCEKGTTAVLTEKITPL--EIEVLE 268          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7_RAT (Proteasome subunit beta type-7 OS=Rattus norvegicus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.019e-19
Identity = 51/106 (48.11%), Postives = 72/106 (67.92%), Query Frame = -3
Query:  169 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE 486
            LP+ TMGSGSLAAMA+FE K++  + ++E  +LV +AI  GIFNDLGSGSN+D+CVI+K   ++LR + +PN +     +       T VL  K+TPL   +EV+E
Sbjct:  165 LPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTPL--ELEVLE 268          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7_MOUSE (Proteasome subunit beta type-7 OS=Mus musculus GN=Psmb7 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.331e-19
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = -3
Query:  169 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE 486
            LP+ TMGSGSLAAMA+FE K++  + ++E  +LV +AI  GIFNDLGSGSN+D+CVI+K   ++LR   +PN +     +       T VL  K+TPL   +EV+E
Sbjct:  165 LPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPFSVPNKKGTRLGRYRCEKGTTAVLTEKVTPL--EIEVLE 268          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7_YEAST (Proteasome component PUP1 OS=Saccharomyces cerevisiae GN=PUP1 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.738e-19
Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = -3
Query:  211 FATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKG-HKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 480
            + ++GSGSLAAMA+ ES +K+ LTK+E I+L  DAI  GI+NDLGSGSNVDVCV+  G   EYLRN+L PN R     K Y FP+ T  +L
Sbjct:  153 YLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGKDAEYLRNYLTPNVRE-EKQKSYKFPRGTTAVL 242          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7_PIG (Proteasome subunit beta type-7 OS=Sus scrofa GN=PSMB7 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 3.871e-19
Identity = 51/106 (48.11%), Postives = 71/106 (66.98%), Query Frame = -3
Query:  169 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLTKITPLRERVEVVE 486
            LP+ TMGSGSLAAMA+FE K++  + ++E  QLV +AI  GIFNDLGSGSN+D+CVI+K   ++LR + +PN +     +       T VL  K+T L   +EV+E
Sbjct:  165 LPYVTMGSGSLAAMAVFEDKFRPEMEEEEAKQLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKGTRFGRYRCEKGTTAVLTEKVTAL--DIEVLE 268          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7_BOVIN (Proteasome subunit beta type-7 OS=Bos taurus GN=PSMB7 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 5.056e-19
Identity = 52/107 (48.60%), Postives = 73/107 (68.22%), Query Frame = -3
Query:  169 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLLT-KITPLRERVEVVE 486
            LP+ TMGSGSLAAMA+FE K++  + ++E  +LV +AI  GIFNDLGSGSN+D+CVI+K   ++LR + +PN +       Y   K T  +LT K+T L   +EV+E
Sbjct:  165 LPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKKLVSEAIAAGIFNDLGSGSNIDLCVISKSKLDFLRPYSVPNKKG-TRFGRYRCEKGTNAVLTEKVTTL--EIEVLE 268          
BLAST of DN617890 vs. ExPASy Swiss-Prot
Match: PSB7_SCHPO (Probable proteasome subunit beta type-7 OS=Schizosaccharomyces pombe GN=SPAC23D3.07 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.174e-13
Identity = 40/92 (43.48%), Postives = 59/92 (64.13%), Query Frame = -3
Query:  211 LPFATMGSGSLAAMAMFESKYKEGLTKDEGIQLVVDAICFGIFNDLGSGSNVDVCVITKGHKEYLRNHLLPNPRTFVNAKGYSFPKKTEVLL 486
            LP+  +GSGSLAA+++ E+KY+  L + E ++LV +AI  GIFNDLGSGSN D+ VI +      R +  PN R    +K Y++ + T  +L
Sbjct:  157 LPYVALGSGSLAAISVLETKYQPDLERHEAMELVKEAIEAGIFNDLGSGSNCDLVVIDEEKATPYRGYSKPNERATKQSK-YTYDRGTTAVL 247          
The following BLAST results are available for this feature:
BLAST of DN617890 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
PSB7B_ARATH1.782e-4881.58Proteasome subunit beta type-7-B OS=Arabidopsis th... [more]
PSB7A_ARATH6.771e-4879.65Proteasome subunit beta type-7-A OS=Arabidopsis th... [more]
PSB7_DICDI1.422e-2154.81Proteasome subunit beta type-7 OS=Dictyostelium di... [more]
PSB7_HUMAN4.573e-2049.06Proteasome subunit beta type-7 OS=Homo sapiens GN=... [more]
PSB7_RAT1.019e-1948.11Proteasome subunit beta type-7 OS=Rattus norvegicu... [more]
PSB7_MOUSE1.331e-1948.11Proteasome subunit beta type-7 OS=Mus musculus GN=... [more]
PSB7_YEAST1.738e-1957.14Proteasome component PUP1 OS=Saccharomyces cerevis... [more]
PSB7_PIG3.871e-1948.11Proteasome subunit beta type-7 OS=Sus scrofa GN=PS... [more]
PSB7_BOVIN5.056e-1948.60Proteasome subunit beta type-7 OS=Bos taurus GN=PS... [more]
PSB7_SCHPO3.174e-1343.48Probable proteasome subunit beta type-7 OS=Schizos... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617890 ID=DN617890; Name=DN617890; organism=Citrus sinensis; type=EST; length=488bp
CACAAAGCTAAATAACATAATCCACAAGTAGTCATGTGCGAACCCAATTC
CGGAAAATGTAAAATTTTAAAAAATATCATTCCAGTTTCTAAACCAGGAA
TTGTAAACTATACTCTGATTTCAGCCTTGTGCTCTTCTGATCTTTCACTC
TTCCATTGCATCTCCTCCCTCAACCACTTCCACCCTTTCCCTCAGCGGGG
TGATCTTCGTCAAGAGGACCTCTGTCTTCTTAGGGAAAGAATAGCCTTTG
GCATTGACAAAGGTGCGAGGATTTGGCAAAAGGTGGTTCCTCAGGTACTC
TTTGTGCCCCTTGGTAATTACACAGACATCAACATTGCTTCCACTTCCCA
AGTCATTGAATATACCAAAGCAAATGGCGTCCACAACTAGCTGTATTCCC
TCATCTTTAGTCAGGCCTTCTTTGTATTTTGATTCAAACATAGCCATGGC
AGCAAGAGAACCAGAACCCATTGTCGCAAATGGTAAAG
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