DN617887

Overview
NameDN617887
Unique NameDN617887
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_MOUSE (WD repeat-containing protein 48 OS=Mus musculus GN=Wdr48 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.280e-21
Identity = 59/165 (35.76%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  141 AGNNANSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            A ++  +T  R++ +++YV+ +  +  +  G+N L      +   ++ LFT  RD  ++ WS+         A+ E H DWVND VL     TL+S SSDTT+K WN +  G C+ TLR H DYV  LA A K+  +VAS GL  ++F+WD+    A + S + +
Sbjct:    2 AAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNAL-----QLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDVVLCCNGKTLISASSDTTVKVWN-AHKGFCMSTLRTHKDYVKALAYA-KDKELVASAGLDRQIFLWDVNTLTALTASNNTV 159          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_PONAB (WD repeat-containing protein 48 OS=Pongo abelii GN=WDR48 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 59/165 (35.76%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  141 AGNNANSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            A ++  +T  R++ +++YV+ +  +  +  G+N L      +   ++ LFT  RD  ++ WS+         A+ E H DWVND VL     TL+S SSDTT+K WN +  G C+ TLR H DYV  LA A K+  +VAS GL  ++F+WD+    A + S + +
Sbjct:    2 AAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNAL-----QLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWN-AHKGFCMSTLRTHKDYVKALAYA-KDKELVASAGLDRQIFLWDVNTLTALTASNNTV 159          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_MACFA (WD repeat-containing protein 48 OS=Macaca fascicularis GN=WDR48 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 59/165 (35.76%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  141 AGNNANSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            A ++  +T  R++ +++YV+ +  +  +  G+N L      +   ++ LFT  RD  ++ WS+         A+ E H DWVND VL     TL+S SSDTT+K WN +  G C+ TLR H DYV  LA A K+  +VAS GL  ++F+WD+    A + S + +
Sbjct:    2 AAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNAL-----QLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWN-AHKGFCMSTLRTHKDYVKALAYA-KDKELVASAGLDRQIFLWDVNTLTALTASNNTV 159          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_HUMAN (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 59/165 (35.76%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  141 AGNNANSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            A ++  +T  R++ +++YV+ +  +  +  G+N L      +   ++ LFT  RD  ++ WS+         A+ E H DWVND VL     TL+S SSDTT+K WN +  G C+ TLR H DYV  LA A K+  +VAS GL  ++F+WD+    A + S + +
Sbjct:    2 AAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNAL-----QLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWN-AHKGFCMSTLRTHKDYVKALAYA-KDKELVASAGLDRQIFLWDVNTLTALTASNNTV 159          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_CHICK (WD repeat-containing protein 48 OS=Gallus gallus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 59/165 (35.76%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  141 AGNNANSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            A ++  +T  R++ +++YV+ +  +  +  G+N L      +   ++ LFT  RD  ++ WS+         A+ E H DWVND VL     TL+S SSDTT+K WN +  G C+ TLR H DYV  LA A K+  +VAS GL  ++F+WD+    A + S + +
Sbjct:    2 AAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNAL-----QLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWN-AHKGFCMSTLRTHKDYVKALAYA-KDKELVASAGLDRQIFLWDVNTLTALTASNNTV 159          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_BOVIN (WD repeat-containing protein 48 OS=Bos taurus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.284e-21
Identity = 59/165 (35.76%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  141 AGNNANSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            A ++  +T  R++ +++YV+ +  +  +  G+N L      +   ++ LFT  RD  ++ WS+         A+ E H DWVND VL     TL+S SSDTT+K WN +  G C+ TLR H DYV  LA A K+  +VAS GL  ++F+WD+    A + S + +
Sbjct:    2 AAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNAL-----QLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWN-AHKGFCMSTLRTHKDYVKALAYA-KDKELVASAGLDRQIFLWDVNTLTALTASNNTV 159          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_XENTR (WD repeat-containing protein 48 OS=Xenopus tropicalis GN=wdr48 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 58/165 (35.15%), Postives = 92/165 (55.76%), Query Frame = 3
Query:  141 AGNNANSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            A ++  +T  R++ +++YV+ +  +  +  G+N L      +   ++ LFT  RD  ++ W++         A+ E H DWVND VL     TL+S SSDTT+K WN +  G C+ TLR H DYV  LA A K+  +VAS GL  ++F+WD+    A + S + +
Sbjct:    2 AAHHRQNTAGRRKVQVSYVIRDEVEKYNRNGVNAL-----QLDPALNRLFTAGRDSIIRIWNVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWN-AHKGFCMSTLRTHKDYVKALAYA-KDKELVASAGLDRQIFLWDVNTLTALTASNNTV 159          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 9.545e-21
Identity = 60/174 (34.48%), Postives = 94/174 (54.02%), Query Frame = 3
Query:  114 VVAMHRVGSAGNNANSTRPRKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVL-VGDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            +  +HR  +AG        R++ +++YV+ +  +  +  G+N L      +   ++ LFT  RD  ++ WS+         A+ E H DWVND +L     TL+S SSDTT+K WN +  G C+ TLR H DYV  LA A K+  +VAS GL  ++F+WD+    A + S + +
Sbjct:    1 MATLHRQNAAG--------RRKVQVSYVIRDEVEKYNRNGVNAL-----QLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIILCCNGKTLISASSDTTVKVWN-AHKGFCMSTLRTHKDYVKALAYA-KDKELVASAGLDRQIFLWDVNTLTALTASNNTV 159          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_DROYA (WD repeat-containing protein 48 homolog OS=Drosophila yakuba GN=GE13034 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  171 RKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVLV-GDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            RK+ ++++V+ ++++ +H  G+N L +     +NG   L++  RD  ++ W+   D       + E H DWVND VL      L+S S DTT+K WN    G C+ TLR H DYV  LA A K+   VAS GL   +F+WD+    A + S + +
Sbjct:   10 RKKMQVSFVIRDAEEKQHRNGVNALQL---DANNGK--LYSAGRDAIIRVWNTRTDSSEKYIQSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAQK-GFCMSTLRTHRDYVQALAYA-KDREQVASAGLDKAIFLWDVNTLTALTASNNTV 157          
BLAST of DN617887 vs. ExPASy Swiss-Prot
Match: WDR48_DROSI (WD repeat-containing protein 48 homolog OS=Drosophila simulans GN=GD25924 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.167e-18
Identity = 55/155 (35.48%), Postives = 85/155 (54.84%), Query Frame = 3
Query:  171 RKEKRLTYVLNNSDDTKHCAGINCLAVLKSSVSNGVDYLFTGSRDGTLKRWSLADDVGS-CSATFESHVDWVNDAVLV-GDNTLVSCSSDTTLKTWNCSSDGTCIRTLRQHSDYVTCLAAAEKNSNIVASGGLGAEVFIWDIEAALAPSKSGDAM 629
            RK+ ++++V+ ++++ +H  G+N L +     +NG   L++  RD  ++ W+   D       + E H DWVND VL      L+S S DTT+K WN    G C+ TLR H DYV  LA A K+   VAS GL   +F+WD+    A + S + +
Sbjct:   10 RKKMQVSFVIRDAEEKQHRNGVNALQL---DANNGK--LYSAGRDAIIRVWNTRTDSSEKYIQSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVWNAQK-GFCMSTLRTHRDYVQALAYA-KDREQVASAGLDKAIFLWDVNTLTALTASNNTV 157          
The following BLAST results are available for this feature:
BLAST of DN617887 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
WDR48_MOUSE3.280e-2135.76WD repeat-containing protein 48 OS=Mus musculus GN... [more]
WDR48_PONAB4.284e-2135.76WD repeat-containing protein 48 OS=Pongo abelii GN... [more]
WDR48_MACFA4.284e-2135.76WD repeat-containing protein 48 OS=Macaca fascicul... [more]
WDR48_HUMAN4.284e-2135.76WD repeat-containing protein 48 OS=Homo sapiens GN... [more]
WDR48_CHICK4.284e-2135.76WD repeat-containing protein 48 OS=Gallus gallus G... [more]
WDR48_BOVIN4.284e-2135.76WD repeat-containing protein 48 OS=Bos taurus GN=W... [more]
WDR48_XENTR9.545e-2135.15WD repeat-containing protein 48 OS=Xenopus tropica... [more]
WDR48_DANRE9.545e-2134.48WD repeat-containing protein 48 OS=Danio rerio GN=... [more]
WDR48_DROYA1.167e-1835.48WD repeat-containing protein 48 homolog OS=Drosoph... [more]
WDR48_DROSI1.167e-1835.48WD repeat-containing protein 48 homolog OS=Drosoph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01N04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617887 ID=DN617887; Name=DN617887; organism=Citrus sinensis; type=EST; length=630bp
ATTTTCTTCATTAATTAAAAAAATTCCCAGTCTCTTCTCCATTTTCTTTT
TTGAAACAAAATTCTTAGGGTTTACTTCAATTTCTCCTTCGATTGATTTC
TTAAACTACTGGGGTTGTTGCAATGCACCGCGTGGGTAGTGCGGGTAACA
ATGCCAATTCTACTCGCCCCCGTAAAGAGAAGAGGTTGACATATGTGTTG
AATAATTCTGATGACACCAAGCATTGTGCTGGCATAAATTGTTTGGCTGT
ATTGAAGTCATCTGTATCCAATGGGGTTGATTACCTGTTCACTGGCAGTC
GTGATGGCACATTAAAGAGATGGTCACTTGCTGATGATGTTGGAAGTTGC
TCTGCAACATTTGAGTCGCATGTTGACTGGGTAAATGACGCTGTCCTTGT
AGGTGATAATACTCTTGTTTCCTGCTCTTCAGACACCACCCTCAAGACAT
GGAATTGCTCGTCTGATGGAACTTGTATAAGGACTCTCCGTCAGCACTCT
GACTATGTTACTTGTCTCGCTGCAGCAGAAAAAAATAGCAATATTGTTGC
ATCTGGTGGTCTTGGTGCGGAGGTTTTCATATGGGATATAGAAGCTGCCC
TTGCTCCATCGAAATCAGGTGATGCCATGG
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