DN617886

Overview
NameDN617886
Unique NameDN617886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length543
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617886 vs. ExPASy Swiss-Prot
Match: WDR48_PONAB (WD repeat-containing protein 48 OS=Pongo abelii GN=WDR48 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.332e-11
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = -1
Query:   73 PWWCLDCVLNNRLPPRENTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMV-FDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSGLKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYR 498
            P W +D  ++  +P  +  K  FYL P   S  + L + +LSA  +L++ KV+ +V EK++  D  S + +      P            G+      +    + +  IE+LC +QVL P+M L TV+ ++WK   DL L+YR
Sbjct:  547 PQWVIDITVDKNMP--KFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKP------------GEQEKEEDIAVLAEEK--IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 673          
BLAST of DN617886 vs. ExPASy Swiss-Prot
Match: WDR48_MACFA (WD repeat-containing protein 48 OS=Macaca fascicularis GN=WDR48 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.332e-11
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = -1
Query:   73 PWWCLDCVLNNRLPPRENTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMV-FDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSGLKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYR 498
            P W +D  ++  +P  +  K  FYL P   S  + L + +LSA  +L++ KV+ +V EK++  D  S + +      P            G+      +    + +  IE+LC +QVL P+M L TV+ ++WK   DL L+YR
Sbjct:  492 PQWVIDITVDKNMP--KFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKP------------GEQEKEEDIAVLAEEK--IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 618          
BLAST of DN617886 vs. ExPASy Swiss-Prot
Match: WDR48_HUMAN (WD repeat-containing protein 48 OS=Homo sapiens GN=WDR48 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.332e-11
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = -1
Query:   73 PWWCLDCVLNNRLPPRENTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMV-FDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSGLKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYR 498
            P W +D  ++  +P  +  K  FYL P   S  + L + +LSA  +L++ KV+ +V EK++  D  S + +      P            G+      +    + +  IE+LC +QVL P+M L TV+ ++WK   DL L+YR
Sbjct:  547 PQWVIDITVDKNMP--KFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKP------------GEQEKEEDIAVLAEEK--IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 673          
BLAST of DN617886 vs. ExPASy Swiss-Prot
Match: WDR48_BOVIN (WD repeat-containing protein 48 OS=Bos taurus GN=WDR48 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.332e-11
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = -1
Query:   73 PWWCLDCVLNNRLPPRENTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMV-FDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSGLKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYR 498
            P W +D  ++  +P  +  K  FYL P   S  + L + +LSA  +L++ KV+ +V EK++  D  S + +      P            G+      +    + +  IE+LC +QVL P+M L TV+ ++WK   DL L+YR
Sbjct:  547 PQWVIDITVDKNMP--KFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKP------------GEQEKEEDIAVLAEEK--IELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYR 673          
BLAST of DN617886 vs. ExPASy Swiss-Prot
Match: WDR48_DANRE (WD repeat-containing protein 48 OS=Danio rerio GN=wdr48 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 3.874e-11
Identity = 43/143 (30.07%), Postives = 71/143 (49.65%), Query Frame = -1
Query:   73 PWWCLDCVLNNRLPPRENTKCSFYLHPCEGSAVQILTQGKLSAPRILRIHKVVNYVIEKMV-FDKPSDSVNPDGTFAPPLGGGPLQSSAVGDGSFRSGLKSWQKLRPSIEILCNNQVLSPDMSLATVRAYVWKKPEDLVLNYR 498
            P W +D  ++  +P  +  K  FYL P   S  + L + +LSA  +L++ KV+ +V EK++  D  S + +      P       +     D S  +  K        IE++C +QVL P+M L TV+ ++WK   DL ++YR
Sbjct:  547 PQWVIDITVDKNMP--KFNKIPFYLQPHSSSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDTESQATSSSANDKPG------EQEKEEDVSVMAEEK--------IELMCLDQVLDPNMDLRTVKHFIWKSGGDLTIHYR 673          
The following BLAST results are available for this feature:
BLAST of DN617886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
WDR48_PONAB1.332e-1130.07WD repeat-containing protein 48 OS=Pongo abelii GN... [more]
WDR48_MACFA1.332e-1130.07WD repeat-containing protein 48 OS=Macaca fascicul... [more]
WDR48_HUMAN1.332e-1130.07WD repeat-containing protein 48 OS=Homo sapiens GN... [more]
WDR48_BOVIN1.332e-1130.07WD repeat-containing protein 48 OS=Bos taurus GN=W... [more]
WDR48_DANRE3.874e-1130.07WD repeat-containing protein 48 OS=Danio rerio GN=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01N04_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617886 ID=DN617886; Name=DN617886; organism=Citrus sinensis; type=EST; length=543bp
AACATCCTCCGTCACACACGCAGAGTCTAGCCTTCTTCCCGAAACCATTT
GGGGTCACTTGCCCTGGACCACTCTGTAATTAAGAACCAGGTCCTCAGGT
TTCTTCCATACATAAGCACGCACAGTAGCCAAGCTCATATCTGGAGATAA
GACCTGATTATTACACAAGATCTCTATAGAAGGCCTTAGCTTTTGCCATG
ACTTCAATCCAGAACGGAAAGATCCATCTCCAACAGCAGAGCTCTGCAAT
GGACCTCCGCCAAGGGGAGGAGCGAATGTTCCATCAGGATTTACACTATC
CGATGGTTTATCAAAAACCATCTTCTCTATGACATAATTAACAACCTTGT
GTATTCTCAATATCCGAGGTGCACTTAGTTTCCCCTGTGTCAGGATCTGG
ACAGCCGAACCTTCACAAGGATGCAGGTAAAAGCTGCACTTGGTGTTTTC
TCTGGGTGGTAGACGATTATTCAAGACACAGTCAAGACACCACCAAGGAA
AGTCCTTGTCATCTTCAGTTCCCTCCAAGTCTGTAATTTTCTT
back to top