DN617883

Overview
NameDN617883
Unique NameDN617883
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length638
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2052 contig Csv1_Contig2052:18..655. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617883 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.517e-29
Identity = 77/194 (39.69%), Postives = 115/194 (59.28%), Query Frame = 1
Query:   73 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGS-KADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAV 636
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++TVLF  FG+  L +      D G           KK D +F+        G  +    +   ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AV
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALGLMTCLSVLFGYAT-TVIPRVYTYYVSTVLFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPGDVETGTSITVPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAV 285          
BLAST of DN617883 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.282e-28
Identity = 75/193 (38.86%), Postives = 112/193 (58.03%), Query Frame = 1
Query:   73 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAV 636
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++T LF  FG+  L +      D G           KK D +F+          +        ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AV
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAV 284          
BLAST of DN617883 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 126.331 bits (316), Expect = 1.282e-28
Identity = 75/193 (38.86%), Postives = 112/193 (58.03%), Query Frame = 1
Query:   73 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFS---DGGXXXXXXXXX--KKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAV 636
            +  F  ++++ ++SE+GDKTFF AAI+AMR+ R  VL+G + AL +MT LS + G+A   +I R  T++++T LF  FG+  L +      D G           KK D +F+          +        ++ +L  F SPIF++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AV
Sbjct:   94 IHAFVAAISVIIVSELGDKTFFIAAIMAMRYNRLTVLAGAMLALALMTCLSVLFGYAT-TVIPRVYTYYVSTALFAIFGIRMLREGLKMSPDEGQEELEEVQAELKKKDEEFQRTKLLNGPDVETGTSTAIPQKKWL-HFISPIFVQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAV 284          
BLAST of DN617883 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 2.856e-28
Identity = 75/199 (37.69%), Postives = 107/199 (53.77%), Query Frame = 1
Query:   91 SLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANA--------GA---------TKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAV 636
            S++M    EIGDKTF  AA+LA  + R  V +G   AL +MT+L  ++G AAP L  RKLT  +  VLF  FG+  L +A              + +  +  AN         GA         ++ G     +LK + R  ++  FSP+F+KAF++TF  EWGD+SQ+ATI +AA +N +GV +G  +G A CT  AV
Sbjct:   53 SISMIFGCEIGDKTFIVAALLAFENSRLTVFAGSYSALFIMTLLGVLLGHAAPLLFPRKLTDILGGVLFVIFGIKMLMEAKEVMDSKESMSDEFQNVRNEIAANGPIDQLLEEGAAPSHYTGHRSRSGHTLMSQLKSKGRNVMATLFSPLFIKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAV 251          
BLAST of DN617883 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.600e-25
Identity = 72/189 (38.10%), Postives = 102/189 (53.97%), Query Frame = 1
Query:   70 VVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKLDADFKANAGATKEGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAV 636
            ++  FT  L +  +SE+GDKTFF A ILAMR+PRR VL G +G L  MTILS ++G     L +R + ++    LF  FG   LWDA               K  A+ +    A K  +  + +LK   R +       I +++F++TF  EWGD++Q+ATI LAA  N +GV  G I+G  +C   AV
Sbjct:    1 MLTAFTAGLLLITVSELGDKTFFIAMILAMRYPRRWVLVGVVGGLAAMTILSVLMGQIFTFLPTRYI-NYAEVALFLIFGTKLLWDA------------RRIKATANLEEMEDAEKAIASGEKKLKIVPRGW------GIVVESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAV 170          
BLAST of DN617883 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.767e-23
Identity = 71/209 (33.97%), Postives = 107/209 (51.20%), Query Frame = 1
Query:   55 SKMSSVVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAF---SDGGXXXXXXXXXKKL-------DADFKANAGATK-----EGSKADDELKKQRRPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAV 636
            S  SS ++ F  S++M  LSEIGDKTF  AA++AMRH R LV S    +L +MTILS VVG +A   +S + T     +LF  FG     +      D G         +++       D D     G T      + +    ++  + R   S  FSP++++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+C+  AV
Sbjct:   33 SGSSSHLKSFLMSVSMIGLSEIGDKTFLIAALMAMRHKRVLVFSAAATSLAIMTILSGVVGHSAVAFLSERYTAFFAGILFLVFGYKLTMEGLEMSKDAGVEEEMAEVEEEIAIKDMNQDMDDVEKGGDTAYDKQLKNASIGKKIVHRIRELASFMFSPVWVQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAV 241          
BLAST of DN617883 vs. ExPASy Swiss-Prot
Match: YLY5_SCHPO (UPF0016 membrane protein C186.05c OS=Schizosaccharomyces pombe GN=SPAC186.05c PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.600e-17
Identity = 64/204 (31.37%), Postives = 93/204 (45.59%), Query Frame = 1
Query:   73 VQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLSGCLGALIVMTILSAVVGWAAPNLISRKLTHHITTVLFFGFGLWSLWDAFSDGGXXXXXXXXXKKL------DADFKANAGATKEGSKADDELKKQR----------RPFLSQFFSPIFLKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAV 636
            VQ    S++M +  E+GDK+F   A+LA ++ R  V  G   AL  MT  + +VG AAP L  + +TH +   LF  FG+  L ++               K+      + D K         S       K +          +   S+ FS  F+KAF++ F  E GD+SQ+ATI ++A E    V +G  IG  LCT  AV
Sbjct:   24 VQNIGMSISMIIGCELGDKSFIVTALLAYQYGRASVFFGSYLALFFMTSFAVLVGRAAPFLFPKSITHILGGTLFLIFGVKMLKESKEVRESQQSLENEFDKVEKIIVNEEDMKKTLELGLPASNRSSSTLKDKFFKVFSMSCFKNLFSKKFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTMVAV 227          
The following BLAST results are available for this feature:
BLAST of DN617883 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
TM165_HUMAN7.517e-2939.69Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
TM165_RAT1.282e-2838.86Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE1.282e-2838.86Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
YD68_SCHPO2.856e-2837.69UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
Y615_SYNY38.600e-2538.10UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YB37_YEAST2.767e-2333.97UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
YLY5_SCHPO6.600e-1731.37UPF0016 membrane protein C186.05c OS=Schizosacchar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01N02_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617883 ID=DN617883; Name=DN617883; organism=Citrus sinensis; type=EST; length=638bp
CTTCTCTGAAGCGCGTACAAGCTTATAGTGACTCTCTCTGTTCGTTGAAG
CATATCAAAGATGAGCTCAGTTGTGCAGGGTTTTACCAAGTCGCTTGCCA
TGACTGTTCTATCTGAGATCGGCGACAAGACGTTTTTTGCCGCTGCGATC
TTGGCAATGCGTCACCCGCGGAGACTGGTCTTGTCAGGTTGCCTGGGAGC
TTTGATTGTGATGACTATTCTTTCTGCTGTTGTTGGCTGGGCCGCTCCAA
ATCTGATCTCTCGTAAATTGACTCATCATATAACAACAGTGCTGTTCTTT
GGATTTGGTCTATGGTCTTTATGGGATGCCTTTAGTGATGGAGGGGAGGC
TGAAGAATTTGAAGAAGTTGAAAAAAAGCTGGATGCTGACTTTAAAGCAA
ATGCAGGAGCAACCAAAGAGGGCAGCAAGGCTGATGATGAATTAAAAAAG
CAAAGGCGGCCATTCCTCTCACAGTTCTTCTCTCCCATCTTTTTGAAGGC
ATTTTCAATTACTTTCTTTGGTGAATGGGGTGACAAGAGCCAGTTAGCTA
CCATTGGTTTAGCTGCCGATGAGAACCCATTTGGCGTTGTTCTTGGCGGA
ATTATAGGACAAGCATTGTGTACGACTGCTGCTGTCAT
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