DN617882

Overview
NameDN617882
Unique NameDN617882
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2052 contig Csv1_Contig2052:509..1111. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617882 vs. ExPASy Swiss-Prot
Match: TM165_RAT (Transmembrane protein 165 OS=Rattus norvegicus GN=Tmem165 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = -2
Query:  350 LKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 595
            ++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:  237 VQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319          
BLAST of DN617882 vs. ExPASy Swiss-Prot
Match: TM165_MOUSE (Transmembrane protein 165 OS=Mus musculus GN=Tmem165 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = -2
Query:  350 LKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 595
            ++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:  237 VQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 319          
BLAST of DN617882 vs. ExPASy Swiss-Prot
Match: TM165_HUMAN (Transmembrane protein 165 OS=Homo sapiens GN=TMEM165 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 8.896e-18
Identity = 41/83 (49.40%), Postives = 60/83 (72.29%), Query Frame = -2
Query:  350 LKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQS-FLSP 595
            ++A ++TF  EWGD+SQL TI LAA E+P+GV +GG +G  LCT  AVIGG+ +A +IS + V + GG++F+ F   + F+SP
Sbjct:  238 VQALTLTFLAEWGDRSQLTTIVLAAREDPYGVAVGGTVGHCLCTGLAVIGGRMIAQKISVRTVTIIGGIVFLAFAFSALFISP 320          
BLAST of DN617882 vs. ExPASy Swiss-Prot
Match: Y615_SYNY3 (UPF0016 membrane protein sll0615 OS=Synechocystis sp. (strain PCC 6803) GN=sll0615 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.766e-17
Identity = 39/83 (46.99%), Postives = 59/83 (71.08%), Query Frame = -2
Query:  347 LKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSFLSPV 595
            +++F++TF  EWGD++Q+ATI LAA  N +GV  G I+G  +C   AV+GGK +A +ISEK V L GG+LF +F + S+ + +
Sbjct:  123 VESFALTFVAEWGDRTQIATIALAASNNAWGVSAGAILGHTICAVIAVMGGKFVAGRISEKTVTLIGGLLFYLFAVVSWWTKI 205          
BLAST of DN617882 vs. ExPASy Swiss-Prot
Match: YD68_SCHPO (UPF0016 membrane protein C17G8.08c OS=Schizosaccharomyces pombe GN=SPAC17G8.08c PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.285e-16
Identity = 39/79 (49.37%), Postives = 55/79 (69.62%), Query Frame = -2
Query:  359 LKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGIQSF 595
            +KAF++TF  EWGD+SQ+ATI +AA +N +GV +G  +G A CT  AVI GK ++++I    V   GG+LFI FG+  F
Sbjct:  204 IKAFALTFVSEWGDRSQIATIAMAASDNVYGVFMGANVGHACCTALAVISGKYISTKIKVHKVMFIGGILFIAFGLVYF 282          
BLAST of DN617882 vs. ExPASy Swiss-Prot
Match: YB37_YEAST (UPF0016 membrane protein YBR187W OS=Saccharomyces cerevisiae GN=YBR187W PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.625e-11
Identity = 30/76 (39.47%), Postives = 52/76 (68.42%), Query Frame = -2
Query:  368 LKAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGIIGQALCTTAAVIGGKSLASQISEKIVALSGGVLFIVFGI 595
            ++ F + F GE GD+SQ++ I +A D + + V+ G +IG A+C+  AV+GGK LA++IS + + L+  +LF +F +
Sbjct:  194 VQIFLMVFLGELGDRSQISIIAMATDSDYWYVIAGAVIGHAICSGLAVVGGKLLATRISIRTITLASSLLFFIFAL 269          
The following BLAST results are available for this feature:
BLAST of DN617882 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
TM165_RAT8.896e-1849.40Transmembrane protein 165 OS=Rattus norvegicus GN=... [more]
TM165_MOUSE8.896e-1849.40Transmembrane protein 165 OS=Mus musculus GN=Tmem1... [more]
TM165_HUMAN8.896e-1849.40Transmembrane protein 165 OS=Homo sapiens GN=TMEM1... [more]
Y615_SYNY35.766e-1746.99UPF0016 membrane protein sll0615 OS=Synechocystis ... [more]
YD68_SCHPO1.285e-1649.37UPF0016 membrane protein C17G8.08c OS=Schizosaccha... [more]
YB37_YEAST1.625e-1139.47UPF0016 membrane protein YBR187W OS=Saccharomyces ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01N02_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001N02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617882 ID=DN617882; Name=DN617882; organism=Citrus sinensis; type=EST; length=596bp
GAGAAGATGATACAGAGCAATACAAGAATGGGAAAAGCAGACTGCCAAGA
CAGAAATTTAGCTTATGGCATGCCTCAAATATCTCATTTGAGATGGATTA
AACAATAACTTATTTCAATGGAGAACAACAATGAGTGCAGAGGCCAAAAA
ATAATAATCAACTATTCAGTATGGTATAACCTATTGAATATTTTTAGTGA
CTTAAACCAGTTTGCTTCTAGGCCATGCTTTCGTAATAATCATAATCACT
GACTTGGCTAATGATAGAGCTTTGAAAGTATCAGTGAAAAATATTCTTCA
ATTCACCGAATCAGCTTTCAATCCATCATTGTGGGGATTATGACTTAACC
GGCGAAAGGAAGGATTGAATTCCAAAAACAATGAAGAGAACTCCACCCGA
GAGTGCGACTATTTTCTCAGATATCTGAGACGCCAAGCTCTTTCCTCCAA
TGACAGCAGCAGTCGTACACAATGCTTGTCCTATAATTCCGCCAAGAACA
ACGCCAAATGGGTTCTCATCGGCAGCTAAACCAATGGTAGCTAACTGGCT
CTTGTCACCCCATTCACCAAAGAAAGTAATTGAAAATGCCTTCAAA
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