DN617879

Overview
NameDN617879
Unique NameDN617879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length605
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617879_ssr79 microsatellite DN617879_ssr79:79..90. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6287 contig Csv1_Contig6287:1261..1865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 3.465e-49
Identity = 86/119 (72.27%), Postives = 104/119 (87.39%), Query Frame = -3
Query:  226 VWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 582
            VW+QNQL+Q QTKE++++YINELCD +P+PMG+S +DCG++ +MP VSFTIG KIF+L+PE+YILK GEG    CISGF AFD+PPPRGPLWILGDVFMG YHTVFD GKLR+G AEAA
Sbjct:  395 VWMQNQLRQNQTKERIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 3.585e-46
Identity = 81/119 (68.07%), Postives = 99/119 (83.19%), Query Frame = -3
Query:  226 VWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 582
            VW+QNQL Q +T++ +L+YIN+LCD LP+PMGES +DCG + +MP +SFTIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD GK+R+GFA++A
Sbjct:  391 VWMQNQLAQNKTQDLILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 2.324e-45
Identity = 81/119 (68.07%), Postives = 98/119 (82.35%), Query Frame = -3
Query:  226 VWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 582
            VW+QNQL Q +T++ +L Y+N+LC+ LP+PMGES +DCG + +MP++ FTIG K F L PE+YILK GEG A  CISGF A D+PPPRGPLWILGDVFMG YHTVFD GKLRIGFA+AA
Sbjct:  390 VWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 180.644 bits (457), Expect = 5.177e-45
Identity = 76/119 (63.87%), Postives = 98/119 (82.35%), Query Frame = -3
Query:  226 VWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 582
            VW+QNQ++Q +T+E +++Y+++LC+ LP+PMGES +DC  + +MPN++FT+G K FNLSPEQY+LK GEG    CISGF A D+ PP GPLWILGDVFMG YHTVFD G LR+GFAEAA
Sbjct:  355 VWMQNQIRQNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 1.080e-42
Identity = 77/119 (64.71%), Postives = 98/119 (82.35%), Query Frame = -3
Query:  226 VWVQNQLKQKQTKEKVLSYINELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 582
            VW++NQL++ +TKE +L+Y N+LC+ LP+P GES + C +I  MPN++FTI +K F L+PEQYI+K  +G   VCISGFMAFD+PPPRGPLWILGDVFMG YHTVFD GK RIGFA++A
Sbjct:  378 VWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_CLUHA (Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.557e-25
Identity = 47/93 (50.54%), Postives = 69/93 (74.19%), Query Frame = -3
Query:  229 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 507
            ++P   GE +IDC ++PT+P +SF +G K ++L+ EQY+LK  +G   +C+SG M  ++PPP GPLWILGDVF+G Y+TVFD    R+GFA++
Sbjct:  303 AIPLIQGEYMIDCKKVPTLPTISFNVGGKTYSLTGEQYVLKESQGGKTICLSGLMGLEIPPPAGPLWILGDVFIGQYYTVFDRESNRVGFAKS 395          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_CHIHA (Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.122e-23
Identity = 47/93 (50.54%), Postives = 67/93 (72.04%), Query Frame = -3
Query:  229 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 507
            + P   GE +++C  +P++P +SFT+G +++ L+ EQYILK  +    +C+SGFM  D+P P GPLWILGDVFMG Y+TVFD    R+GFA+A
Sbjct:  303 AFPLIQGEYMVNCDTVPSLPVISFTVGGQVYTLTGEQYILKVTQAGKTMCLSGFMGLDIPAPAGPLWILGDVFMGQYYTVFDRDANRVGFAKA 395          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 1.914e-23
Identity = 48/99 (48.48%), Postives = 64/99 (64.65%), Query Frame = -3
Query:  229 INELCDSLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEA 525
            IN+     P   GE ++DC  IP +P +SF +G K F+L    Y+L+  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+T FD G  R+GFA A
Sbjct:  288 INKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGIDIPPPNGPLWILGDVFIGKYYTEFDMGNDRVGFATA 386          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.266e-23
Identity = 48/94 (51.06%), Postives = 65/94 (69.15%), Query Frame = -3
Query:  226 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 507
            ++P   GE +I C ++ T+P ++  +G K + LSPE Y LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+GFAEAA
Sbjct:  317 AVPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 410          
BLAST of DN617879 vs. ExPASy Swiss-Prot
Match: CATD_PIG (Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.265e-23
Identity = 48/94 (51.06%), Postives = 66/94 (70.21%), Query Frame = -3
Query:  226 SLPNPMGESIIDCGRIPTMPNVSFTIGDKIFNLSPEQYILKTGEGIAEVCISGFMAFDLPPPRGPLWILGDVFMGVYHTVFDSGKLRIGFAEAA 507
            ++P   GE +I C ++P++P+V+ T+G K + LS E Y LK  +    +C+SGFM  D+PPP GPLWILGDVF+G Y+TVFD    R+G AEAA
Sbjct:  252 AVPLIQGEYMIPCEKVPSLPDVTVTLGGKKYKLSSENYTLKVSQAGQTICLSGFMGMDIPPPGGPLWILGDVFIGRYYTVFDRDLNRVGLAEAA 345          
The following BLAST results are available for this feature:
BLAST of DN617879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
ASPR_CUCPE3.465e-4972.27Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
ASPR1_ORYSJ3.585e-4668.07Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
ASPR_HORVU2.324e-4568.07Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
CYPR1_CYNCA5.177e-4563.87Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPRX_ORYSJ1.080e-4264.71Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
CATD_CLUHA4.557e-2550.54Cathepsin D OS=Clupea harengus GN=ctsd PE=1 SV=1[more]
CATD_CHIHA1.122e-2350.54Cathepsin D OS=Chionodraco hamatus GN=ctsd PE=1 SV... [more]
ASPP_AEDAE1.914e-2348.48Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATD_HUMAN3.266e-2351.06Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_PIG4.265e-2351.06Cathepsin D OS=Sus scrofa GN=CTSD PE=1 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01M24_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617879 ID=DN617879; Name=DN617879; organism=Citrus sinensis; type=EST; length=605bp
GAATATCATAAAATTGAAGTACTTTAAACATAGGATGATAGGATTTTACA
TAAGTATATATCAGCATATCATCTGTGGTGATGATGATGATAGTTATGCA
TAAAAGCATACTGATCGTTTTACAGTACATGAAAACCATAATCTACATTC
TACAACCCTCCTCCTCATATGAGCAGGTGATGATCGCTGCTACTACATAA
AAACTTGACAGTAAGTAGATCATTACGCAGCCTCAGCAAAGCCGATCCGG
AGCTTACCAGAGTCGAAAACAGTGTGATAAACCCCCATGAATACATCTCC
CAGAATCCACAGAGGACCCCTTGGAGGAGGCAGGTCGAAAGCCATGAAGC
CACTGATGCAGACTTCTGCAATCCCTTCTCCGGTTTTCAGAATATACTGC
TCTGGAGAGAGGTTGAAAATTTTGTCTCCGATGGTGAATGAAACATTTGG
CATGGTTGGAATGCGACCACAGTCAATAATTGATTCTCCCATCGGATTTG
GCAGGCTGTCGCAGAGCTCATTTATATAACTGAGTACTTTCTCCTTTGTT
TGCTTTTGTTTTAGCTGATTCTGGACCCAAACACGGTCATTTCACAAGCA
CTGCA
back to top