DN617876

Overview
NameDN617876
Unique NameDN617876
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6210 contig Csv1_Contig6210:43..696. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_XENTR (BRCA1-A complex subunit BRE OS=Xenopus tropicalis GN=bre PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 47/105 (44.76%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTM 525
            DRF L IPY  +T+KWD+I+NA +P +PPD IFG ED +F P            S  ++LA WN  DP  LL ++ EL  QY  YQ  R+ E    RL FE  T+
Sbjct:   54 DRFKLHIPYAGETLKWDIIFNATYPELPPDFIFG-EDAEFLP----------DPSALHNLAEWNPSDPECLLLVVKELVQQYHQYQCSRLSE--SSRLMFEYQTL 145          
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_SAGOE (BRCA1-A complex subunit BRE OS=Saguinus oedipus GN=BRE PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 528
            DRF L IPY  +T+KWD+I+NA++P +PPD IFG ED +F P         D  +++N LA+WN  +P  LL ++ EL  QY  +Q  R+ E    RL FE  T+L
Sbjct:   54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-LASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLL 146          
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_HUMAN (BRCA1-A complex subunit BRE OS=Homo sapiens GN=BRE PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.939e-15
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 528
            DRF L IPY  +T+KWD+I+NA++P +PPD IFG ED +F P         D  +++N LA+WN  +P  LL ++ EL  QY  +Q  R+ E    RL FE  T+L
Sbjct:   54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-LASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLL 146          
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_XENLA (BRCA1-A complex subunit BRE OS=Xenopus laevis GN=bre PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 49/120 (40.83%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTMLS--REGIEMHTSSG 564
            DRF L IPY  +T+KWD+I+NA +P +PPD IFG ED +F P            S  ++L+ WN  DP  LL ++ EL  QY  YQ  R+ E    RL FE  T+    + G+ M   +G
Sbjct:   54 DRFKLHIPYAGETLKWDIIFNASYPELPPDFIFG-EDAEFLP----------DPSALHNLSEWNPSDPECLLLVVKELVQQYHQYQCSRLSE--SSRLMFEYQTLQEEPQYGLNMEIYAG 160          
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_MESAU (BRCA1-A complex subunit BRE OS=Mesocricetus auratus GN=Bre PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 528
            DRF L IPY  +++KWD+I+NA++P +PPD IFG ED +F P            S  ++LA+WN  DP  LL ++ EL  QY  +Q  R+ E    RL FE  T+L
Sbjct:   54 DRFKLHIPYAGESLKWDIIFNAQYPELPPDFIFG-EDAEFLP----------DPSALHNLASWNPSDPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLL 146          
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_CERAE (BRCA1-A complex subunit BRE OS=Cercopithecus aethiops GN=BRE PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.839e-15
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 528
            DRF L IPY  +T+KWD+I+NA++P +PPD IFG ED +F P         D  +++N LA+WN  +P  LL ++ EL  QY  +Q  R+ E    RL FE  T+L
Sbjct:   54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDVEFLP---------DPSALQN-LASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLL 146          
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_BOVIN (BRCA1-A complex subunit BRE OS=Bos taurus GN=BRE PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.014e-15
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 528
            DRF L IPY  +T+KWD+I+NA++P +PPD IFG ED +F P            S  ++LA+WN  +P  LL ++ EL  QY  +Q  R+ E    RL FE  T+L
Sbjct:   54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP----------DPSALHNLASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLL 146          
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_PONAB (BRCA1-A complex subunit BRE OS=Pongo abelii GN=BRE PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.548e-15
Identity = 46/106 (43.40%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 528
            DRF L +PY  +T+KWD+I+NA++P +PPD IFG ED +F P         D  +++N LA+WN  +P  LL ++ EL  QY  +Q  R+ E    RL FE  T+L
Sbjct:   54 DRFKLHMPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP---------DPSALQN-LASWNPSNPECLLLVVKELVQQYHQFQCSRLRE--SSRLMFEYQTLL 146          
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_RAT (BRCA1-A complex subunit BRE OS=Rattus norvegicus GN=Bre PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.552e-15
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 528
            DRF L IPY  +T+KWD+I+NA++P +PPD IFG ED +F P            S  ++LA+WN  +P  LL ++ EL  QY  +Q  R+ E    RL FE  T+L
Sbjct:   54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP----------DPSALHNLASWNPSNPECLLLVVKELVQQYHQFQCGRLRE--SSRLMFEYQTLL 146          
BLAST of DN617876 vs. ExPASy Swiss-Prot
Match: BRE_MOUSE (BRCA1-A complex subunit BRE OS=Mus musculus GN=Bre PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.552e-15
Identity = 46/106 (43.40%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  211 DRFTLLIPYCLDTIKWDVIYNAEFPHVPPDVIFGPEDEDFHPFYNESGGEGDSRSIKNSLATWNNKDPTRLLALIWELRDQYMSYQRKRVGEVDDDRLKFEICTML 528
            DRF L IPY  +T+KWD+I+NA++P +PPD IFG ED +F P            S  ++LA+WN  +P  LL ++ EL  QY  +Q  R+ E    RL FE  T+L
Sbjct:   54 DRFKLHIPYAGETLKWDIIFNAQYPELPPDFIFG-EDAEFLP----------DPSALHNLASWNPSNPECLLLVVKELVQQYHQFQCGRLRE--SSRLMFEYQTLL 146          
The following BLAST results are available for this feature:
BLAST of DN617876 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
BRE_XENTR2.939e-1544.76BRCA1-A complex subunit BRE OS=Xenopus tropicalis ... [more]
BRE_SAGOE2.939e-1544.34BRCA1-A complex subunit BRE OS=Saguinus oedipus GN... [more]
BRE_HUMAN2.939e-1544.34BRCA1-A complex subunit BRE OS=Homo sapiens GN=BRE... [more]
BRE_XENLA3.839e-1540.83BRCA1-A complex subunit BRE OS=Xenopus laevis GN=b... [more]
BRE_MESAU3.839e-1543.40BRCA1-A complex subunit BRE OS=Mesocricetus auratu... [more]
BRE_CERAE3.839e-1544.34BRCA1-A complex subunit BRE OS=Cercopithecus aethi... [more]
BRE_BOVIN5.014e-1543.40BRCA1-A complex subunit BRE OS=Bos taurus GN=BRE P... [more]
BRE_PONAB6.548e-1543.40BRCA1-A complex subunit BRE OS=Pongo abelii GN=BRE... [more]
BRE_RAT8.552e-1543.40BRCA1-A complex subunit BRE OS=Rattus norvegicus G... [more]
BRE_MOUSE8.552e-1543.40BRCA1-A complex subunit BRE OS=Mus musculus GN=Bre... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617876 ID=DN617876; Name=DN617876; organism=Citrus sinensis; type=EST; length=654bp
GAGCGGCAGACAATCGTGTAGATCGCCGGTGACACTTTCTAGCAACGCCA
CCAACAAAAGCAGTCTCCCACCGACCGATTGTACATAACGATGACGTATG
ATGGATTCCCTCCTTTCATCTCAGCTCAGCTTCATTACCTCATTAATCAC
TTCGCTCATCCCGTCAGGGTTGAACAGGCGTGGTCTGGGAGCAAGTACTC
GAATACTCTTGATCGGTTCACTTTGCTCATACCTTACTGTTTAGACACTA
TCAAATGGGATGTTATATACAATGCAGAGTTTCCACATGTACCTCCCGAT
GTTATATTTGGCCCTGAAGATGAAGATTTTCATCCATTTTACAATGAGAG
TGGGGGAGAAGGGGATTCAAGGTCAATTAAGAACAGTTTGGCTACTTGGA
ATAACAAAGATCCCACACGGCTGCTGGCTCTCATTTGGGAATTAAGGGAT
CAATACATGTCCTACCAGCGGAAGCGTGTTGGGGAAGTCGATGATGATCG
GTTGAAATTTGAAATTTGCACTATGTTATCCAGGGAGGGTATTGAAATGC
ATACGAGTTCAGGTGTTGAAAAGCCAGAGGAGGTCAAATTTGCCGTGCCT
CTCATGGATATGAACATAAATAAAATGGTGGTGGGGTGCCCCTGGAGACA
TCCA
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