DN617861

Overview
NameDN617861
Unique NameDN617861
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length408
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617861_ssr20 microsatellite DN617861_ssr20:20..31. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13664 contig Csv1_Contig13664:827..1234. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617861 vs. ExPASy Swiss-Prot
Match: PTR2_ARATH (Peptide transporter PTR2 OS=Arabidopsis thaliana GN=PTR2 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.540e-19
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = -3
Query:  209 SGLFFLATALGNFLSFFILTVVTYFTTAGGKTGWIPDNLNKGHFDYFFWLLAGLSIFNMLLYVVCA 406
            S L  L  ALGN+LS  ILT+VTYFTT  G+ GWI DNLN GH DYFFWLLAGLS+ NM +Y   A
Sbjct:  510 SALALLTNALGNYLSSLILTLVTYFTTRNGQEGWISDNLNSGHLDYFFWLLAGLSLVNMAVYFFSA 575          
BLAST of DN617861 vs. ExPASy Swiss-Prot
Match: PTR5_ARATH (Peptide transporter PTR5 OS=Arabidopsis thaliana GN=PTR5 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.803e-16
Identity = 37/63 (58.73%), Postives = 45/63 (71.43%), Query Frame = -3
Query:  218 SGLFFLATALGNFLSFFILTVVTYFTTAGGKTGWIPDNLNKGHFDYFFWLLAGLSIFNMLLYV 406
            S L   A A GN+LS F++T+VT  T +GG+ GWI  NLN GH DYFFWLLAGLS  N L+Y+
Sbjct:  492 SALSLTAIAFGNYLSTFLVTLVTKVTRSGGRPGWIAKNLNNGHLDYFFWLLAGLSFLNFLVYL 554          
BLAST of DN617861 vs. ExPASy Swiss-Prot
Match: PTR1_ARATH (Peptide transporter PTR1 OS=Arabidopsis thaliana GN=PTR1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.510e-14
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = -3
Query:  218 SGLFFLATALGNFLSFFILTVVTYFTTAGGKTGWIPDNLNKGHFDYFFWLLAGLSIFNMLLYV 406
            S L     ALGN+LS  ++TVV   T   GK GWIPDNLN+GH DYFF+LLA LS  N L+Y+
Sbjct:  492 SALSLTTVALGNYLSTVLVTVVMKITKKNGKPGWIPDNLNRGHLDYFFYLLATLSFLNFLVYL 554          
BLAST of DN617861 vs. ExPASy Swiss-Prot
Match: PTR2X_ARATH (Probable peptide transporter At1g52190 OS=Arabidopsis thaliana GN=At1g52190 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.166e-11
Identity = 26/66 (39.39%), Postives = 44/66 (66.67%), Query Frame = -3
Query:  209 SGLFFLATALGNFLSFFILTVVTYFTTAGGKTGWIPDNLNKGHFDYFFWLLAGLSIFNMLLYVVCA 406
            + LF L  A+ + L+  +L  V   T+  GK  W+ DN+NKGH++Y++W+LA +S  N++ YV+C+
Sbjct:  498 ASLFGLGMAVASLLASVVLNAVNELTSRNGKESWVSDNINKGHYNYYYWVLAIMSFINVIYYVICS 563          
The following BLAST results are available for this feature:
BLAST of DN617861 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PTR2_ARATH7.540e-1965.15Peptide transporter PTR2 OS=Arabidopsis thaliana G... [more]
PTR5_ARATH7.803e-1658.73Peptide transporter PTR5 OS=Arabidopsis thaliana G... [more]
PTR1_ARATH2.510e-1457.14Peptide transporter PTR1 OS=Arabidopsis thaliana G... [more]
PTR2X_ARATH1.166e-1139.39Probable peptide transporter At1g52190 OS=Arabidop... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01M15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617861 ID=DN617861; Name=DN617861; organism=Citrus sinensis; type=EST; length=408bp
TTTTTTTTTTTTTTTTTCCAAATAAATAAATACAAGCAGTTATTATTAAA
AAAATAAATTCATTTTATTTTACAAACATTGTTCTTGGAACTTTAAGGAG
ATTTGGGGGCTGTGAACCTGCAAATTTTATGTACAAAACCTTTTGGAGAA
GGGGCTACTGCGTCTTCTTGAAAAAAAATTAACCGGCCTTCTTCTGCTTG
TACTTTTTGGCACAAACAACATACAACAACATATTAAAAATGCTGAGTCC
AGCTAAAAGCCAAAAAAAATAATCAAAATGACCCTTATTCAAGTTATCTG
GAATCCATCCAGTTTTCCCCCCAGCAGTTGTGAAATAAGTTACCACTGTC
AAAATGAAAAAACTAAGGAAATTGCCCAACGCTGTCGCCAAAAAAAATAA
CCCACTGC
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