DN617856

Overview
NameDN617856
Unique NameDN617856
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length586
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DN617856 vs. ExPASy Swiss-Prot
Match: PUB62_ARATH (U-box domain-containing protein 62 OS=Arabidopsis thaliana GN=PUB62 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.264e-17
Identity = 39/80 (48.75%), Postives = 60/80 (75.00%), Query Frame = -2 
Query:  292 NRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKILNSQTIEDSCPSHQVQN 531
            N+   +PF+V ++V+IKGN+RTP +FVG+EAV+T+QCLNGWY++K + + E+V+LQYRSL K     + + + P+  V N
Sbjct:  283 NKSNHFPFAVADRVIIKGNKRTPPRFVGREAVVTTQCLNGWYVVKTLDNAESVKLQYRSLAKAPEDPSAK-ATPNKMVSN 361
[Close]
BLAST of DN617856 vs. ExPASy Swiss-Prot
Match: PUB63_ARATH (U-box domain-containing protein 63 OS=Arabidopsis thaliana GN=PUB63 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.155e-16
Identity = 33/68 (48.53%), Postives = 56/68 (82.35%), Query Frame = -2 
Query:  328 NRGVQYPFSVNEKVLIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKILNSQT 531
            +RG+Q+PFS+ + ++I+GN+RTP +FVG+ AVI +QCLNGWY++K + + E+++LQ+ SL KI ++ +
Sbjct:  303 SRGIQFPFSIGDHIIIEGNKRTPPRFVGRIAVIMTQCLNGWYVVKTVDNSESIKLQHCSLAKISDNSS 370
The following BLAST results are available for this feature:
BLAST of DN617856 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUB62_ARATH3.264e-1748.75U-box domain-containing protein 62 OS=Arabidopsis ... [more]
PUB63_ARATH6.155e-1648.53U-box domain-containing protein 63 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01M12_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617856 ID=DN617856; Name=DN617856; organism=Citrus sinensis; type=EST; length=586bp
TTTTTTTTTAACAAAATTATACATGATTGATAACTAAGGCTTTTATGATA
AACCTCATGTTACATTCAAACATTTCTCTTTACAAGCTTCGGATAGGAGG
CCGGGGGCTCACAAATAATCTACCTGATTTTATCTGACTAAATAAATAAC
ATTCAAATACAATATAAGTTACAAGAAACCATCATCACGTTTCTCTAAGT
GTGACGAGGTAATATCACTAATTATGTCCTACGACGATGTGAGGGTGGGT
TTGATATCACTCTTACTAAATTTAAAAACTCAAGAGCTACTGTTCTGAAC
TTGATGTGAGGGACAACTGTCTTCAATCGTCTGAGAGTTCAAAATTTTTC
GAAGAGAACGATATTGCAGGCGAACATTCTCACCACTTCCAATAATTTTA
AGCAAATACCAGCCATTGAGACATTGGGATGTGATGACAGCTTCCTTCCC
AACAAACTTCTCTGGTGTCCTCCTATTTCCCTTGATCAGCACCTTCTCAT
TAACAGAAAATGGATACTGTACCCCCCTATTCAATCCATCATCTGTTGTA
GTAGCATCTCCATTTTCCCTATTGGATCTTCTCATT
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