DN617842

Overview
NameDN617842
Unique NameDN617842
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length670
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617842_ssr136 microsatellite DN617842_ssr136:136..147. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2701 contig Csv1_Contig2701:19..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_TRIEI (Transaldolase OS=Trichodesmium erythraeum (strain IMS101) GN=tal PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  326 EQEGQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAA 664
            E  GQS W DNL R + +   L  +I   G+RG+TSNPAIF+KAI+ +  Y+      +++ K +   Y  LV KDI+DAC +F  +Y+ET G DGY+S+EV P +A DT+ T+  A
Sbjct:   10 ENLGQSIWMDNLSRNIIESGELKSMIGKKGIRGITSNPAIFEKAIAGNAIYDADIEAGIKASKSVIEIYESLVFKDIRDACDIFMPVYEETKGLDGYISIEVPPTIAKDTESTISEA 126          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_THIDA (Transaldolase OS=Thiobacillus denitrificans (strain ATCC 25259) GN=tal PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.172e-21
Identity = 57/115 (49.57%), Postives = 74/115 (64.35%), Query Frame = 2
Query:  335 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            GQS W DNL R +     L  +IA  GV GVTSNP+IFQ A+++S  Y D    L +   D+E  Y  LVI DI+DAC L   +++ + G DGYVS+EV+PRLA DT GTV+ A+
Sbjct:   11 GQSLWLDNLSRDLLRDGALAKMIAEDGVSGVTSNPSIFQNALATSPHYADDLARLRREEADVERRYEALVIPDIRDACDLLLPLFERSAGNDGYVSLEVAPRLAYDTSGTVDEAR 125          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL2_NOSP7 (Transaldolase 2 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=tal2 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.721e-18
Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  326 EQEGQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            +Q GQS W DNL R +    +L  ++ + G+ G+TSNPAIF+KAI+ +  Y+      V++G  I   Y  LV  DI++AC +   +Y+ +N  DGYVS+EV P +A DT+ T+  A+
Sbjct:   10 KQYGQSIWMDNLTRDIIQSGELKDMVENQGISGITSNPAIFEKAIAGNAIYDADIEAGVRAGLPIYKIYESLVFADIRNACDILRPVYEASNRLDGYVSIEVPPTIAHDTEATISEAR 127          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_RENSM (Transaldolase OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=tal PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.007e-18
Identity = 53/115 (46.09%), Postives = 67/115 (58.26%), Query Frame = 2
Query:  335 GQSPWYDNLCRPVT---DLLPLI-ASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            G S W D+L R       L  LI    V GVT+NP+IFQ AIS   +Y  Q  EL   G D+EAA +++  +D+ +AC  F  I   + G DG VS+EV PR A DTQGT+E AK
Sbjct:   12 GVSIWLDDLSRERLTSGSLQKLIDEKNVVGVTTNPSIFQAAISKGTSYEQQVSELAAQGADVEAAVFQITTQDVANACDFFAGIAVASKGVDGRVSIEVDPRKAWDTQGTIEEAK 126          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_THISH (Transaldolase OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=tal PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 2
Query:  335 GQSPWYDNLCRPVTD---LLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQS--GKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            GQS WYD + R + D   L  LI   G+ G+TSNPAIF KAI+ ++ Y    R+ +++  G + EA ++ L I+D+Q A  +F  +Y ET G DG+VS+EVSP LA D + TV  A+
Sbjct:   14 GQSIWYDYIRRDLLDSGELARLIREDGLGGLTSNPAIFDKAIAGTDLYRTAIRDALRADPGLNDEALFFRLAIEDLQRAADVFLPLYRETGGADGFVSLEVSPDLAHDAEATVREAR 130          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_FRAAA (Transaldolase OS=Frankia alni (strain ACN14a) GN=tal PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 49/115 (42.61%), Postives = 71/115 (61.74%), Query Frame = 2
Query:  335 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            G + W D++ R      +L  L+A+  V GVTSNP IFQKAI+SS+ YN+Q R+L   G D+  A   +   D+++AC +   +YD + G DG VS+EV PRLA + + TV  A+
Sbjct:   12 GVAVWLDDISRDRLRTGNLADLVANRSVVGVTSNPTIFQKAIASSDLYNEQLRDLKVRGVDVGEAVRAITAADVREACDVLRGVYDASGGVDGRVSLEVDPRLAHEAERTVAEAR 126          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL2_ANASP (Transaldolase 2 OS=Anabaena sp. (strain PCC 7120) GN=tal2 PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 47/118 (39.83%), Postives = 73/118 (61.86%), Query Frame = 2
Query:  326 EQEGQSPWYDNLCRPVT---DLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            ++ GQS W DNL R +    +L  L+ + G+ G+TSNPAIF+KAI+++  Y+      V++G      Y  L+  DI++AC +   +Y+ +N  DGYVS+EV P +A DTQ T+  A+
Sbjct:   10 KEYGQSIWMDNLSRDIIQSGELKNLVENQGICGITSNPAIFEKAIANNVIYDADIEAGVRAGLPTYKIYESLIFADIRNACDILRPVYEASNKLDGYVSIEVPPTIAHDTQATINEAR 127          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_NEIMF (Transaldolase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=tal PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 2
Query:  335 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D+Q AC +  + ++ T G  G+VS+EVSP L+ D QGTVE A+
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEVAALKQQDLTPKQRYETMAVADVQAACDVCLAEHESTGGKTGFVSLEVSPELSKDAQGTVEEAR 124          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_NEIMB (Transaldolase OS=Neisseria meningitidis serogroup B GN=tal PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.485e-17
Identity = 47/114 (41.23%), Postives = 66/114 (57.89%), Query Frame = 2
Query:  335 GQSPWYDNLCRPVT---DLLPLIASGVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            GQ  W DNL R +    +L  ++  GV GVTSNPAIFQKA +    Y D+   L Q     +  Y  + + D++ AC +  + ++ T G  G+VS+EVSP L+ D QGTVE A+
Sbjct:   11 GQQIWLDNLSRSLVQSGELAQMLKQGVCGVTSNPAIFQKAFAGDALYADEIAALKQQNLSPKQRYETMAVADVRAACDVCLAEHESTGGKTGFVSLEVSPELSKDAQGTVEEAR 124          
BLAST of DN617842 vs. ExPASy Swiss-Prot
Match: TAL_FRASC (Transaldolase OS=Frankia sp. (strain CcI3) GN=tal PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.245e-17
Identity = 48/115 (41.74%), Postives = 70/115 (60.87%), Query Frame = 2
Query:  335 GQSPWYDNLCRP---VTDLLPLIAS-GVRGVTSNPAIFQKAISSSNAYNDQFRELVQSGKDIEAAYWELVIKDIQDACKLFESIYDETNGGDGYVSVEVSPRLADDTQGTVEAAK 667
            G + W D++ R      +L  L+ + GV GVTSNP IFQKAISSS+ Y++Q  +L   G D+  A   +   D++DAC +   +YD + G DG VS+EV PRLA + + T+  A+
Sbjct:   12 GVAVWLDDISRDRLRTGNLAHLVENRGVVGVTSNPTIFQKAISSSDLYDEQLHDLAIRGVDVGEAVRAITAADVRDACDVLRGVYDASGGVDGRVSLEVDPRLAHEAERTLAEAR 126          
The following BLAST results are available for this feature:
BLAST of DN617842 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
TAL_TRIEI1.273e-2144.44Transaldolase OS=Trichodesmium erythraeum (strain ... [more]
TAL_THIDA2.172e-2149.57Transaldolase OS=Thiobacillus denitrificans (strai... [more]
TAL2_NOSP71.721e-1840.68Transaldolase 2 OS=Nostoc punctiforme (strain ATCC... [more]
TAL_RENSM5.007e-1846.09Transaldolase OS=Renibacterium salmoninarum (strai... [more]
TAL_THISH8.541e-1844.44Transaldolase OS=Thioalkalivibrio sp. (strain HL-E... [more]
TAL_FRAAA8.541e-1842.61Transaldolase OS=Frankia alni (strain ACN14a) GN=t... [more]
TAL2_ANASP1.115e-1739.83Transaldolase 2 OS=Anabaena sp. (strain PCC 7120) ... [more]
TAL_NEIMF1.903e-1742.11Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_NEIMB2.485e-1741.23Transaldolase OS=Neisseria meningitidis serogroup ... [more]
TAL_FRASC3.245e-1741.74Transaldolase OS=Frankia sp. (strain CcI3) GN=tal ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M05_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617842 ID=DN617842; Name=DN617842; organism=Citrus sinensis; type=EST; length=670bp
ATCGTACTTGGTTGAAGCTTACAAATCGTCGCTCTTTATTTCTGAGTTTT
TAGATTCAAGGATCAACGAGTCTTTAATGGCGACCATTTCGAAGCTTACA
AATCCAGCTGTTTCTTCATCATCTTTGAAACCCAGATCATCATCATCCTC
ACTGCCTAAATCTTTGATCAGCCTTCAAACCAAAACTGGGTTCAATTCAA
AAGTTGCATCTTCTCAGTTGACCCTCAGAAATAACCACCCTTTGAAGGCC
TCTTTGGTTGTGAAATGTTCCCAATCTGGTGGAAATGGAAGTAGTGCAAA
GAGGACAACTCTTCATGATCTCTATGAGCAGGAAGGGCAGAGCCCTTGGT
ATGATAACCTTTGCCGCCCCGTCACAGATTTGCTTCCGCTCATTGCAAGT
GGTGTTAGAGGTGTTACCAGCAACCCTGCGATTTTCCAGAAAGCAATATC
TTCATCGAATGCTTACAATGATCAATTTAGGGAACTTGTACAATCTGGAA
AAGATATTGAAGCTGCATATTGGGAACTTGTGATTAAGGACATTCAAGAT
GCATGCAAACTTTTTGAGTCAATCTATGATGAAACCAATGGCGGTGATGG
CTATGTTTCTGTCGAAGTTTCTCCCAGACTCGCTGATGATACCCAAGGGA
CTGTGGAGGCAGCAAAATGG
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