DN617839

Overview
NameDN617839
Unique NameDN617839
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length841
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5752 contig Csv1_Contig5752:1..841. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617839 vs. ExPASy Swiss-Prot
Match: SPOP_PONAB (Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.135e-26
Identity = 80/242 (33.06%), Postives = 132/242 (54.55%), Query Frame = 2 
Query:  119 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDFLKDDCLKINCTVGVVASAIDCS---RLHSIQVPESDIGDHFGMLLENEESSDITFNVAGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKGLLHFIY 814
            + +  S+ +TI  +S  +   +G+ I S  FS G     +W +   P G + E++  Y+S+++ L S   ++VRA F+ ++++  G+          +++ES       +G  WG+K+F RR  L  E +  L DD L + C V VV  +++ S    ++ ++VPE  + D  G L EN   +D    VAG++F AHK +LAARSPVF   F   MEE   + + + D+EP+VFK ++ FIY
Sbjct:   28 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY 259
[Close]
BLAST of DN617839 vs. ExPASy Swiss-Prot
Match: SPOP_MOUSE (Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.135e-26
Identity = 80/242 (33.06%), Postives = 132/242 (54.55%), Query Frame = 2 
Query:  119 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDFLKDDCLKINCTVGVVASAIDCS---RLHSIQVPESDIGDHFGMLLENEESSDITFNVAGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKGLLHFIY 814
            + +  S+ +TI  +S  +   +G+ I S  FS G     +W +   P G + E++  Y+S+++ L S   ++VRA F+ ++++  G+          +++ES       +G  WG+K+F RR  L  E +  L DD L + C V VV  +++ S    ++ ++VPE  + D  G L EN   +D    VAG++F AHK +LAARSPVF   F   MEE   + + + D+EP+VFK ++ FIY
Sbjct:   28 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY 259
[Close]
BLAST of DN617839 vs. ExPASy Swiss-Prot
Match: SPOP_HUMAN (Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.135e-26
Identity = 80/242 (33.06%), Postives = 132/242 (54.55%), Query Frame = 2 
Query:  119 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDFLKDDCLKINCTVGVVASAIDCS---RLHSIQVPESDIGDHFGMLLENEESSDITFNVAGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKGLLHFIY 814
            + +  S+ +TI  +S  +   +G+ I S  FS G     +W +   P G + E++  Y+S+++ L S   ++VRA F+ ++++  G+          +++ES       +G  WG+K+F RR  L  E +  L DD L + C V VV  +++ S    ++ ++VPE  + D  G L EN   +D    VAG++F AHK +LAARSPVF   F   MEE   + + + D+EP+VFK ++ FIY
Sbjct:   28 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY 259
[Close]
BLAST of DN617839 vs. ExPASy Swiss-Prot
Match: SPOP_BOVIN (Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.135e-26
Identity = 80/242 (33.06%), Postives = 132/242 (54.55%), Query Frame = 2 
Query:  119 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDFLKDDCLKINCTVGVVASAIDCS---RLHSIQVPESDIGDHFGMLLENEESSDITFNVAGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKGLLHFIY 814
            + +  S+ +TI  +S  +   +G+ I S  FS G     +W +   P G + E++  Y+S+++ L S   ++VRA F+ ++++  G+          +++ES       +G  WG+K+F RR  L  E +  L DD L + C V VV  +++ S    ++ ++VPE  + D  G L EN   +D    VAG++F AHK +LAARSPVF   F   MEE   + + + D+EP+VFK ++ FIY
Sbjct:   28 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIY 259
[Close]
BLAST of DN617839 vs. ExPASy Swiss-Prot
Match: SPOP_XENTR (Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 80/242 (33.06%), Postives = 131/242 (54.13%), Query Frame = 2 
Query:  119 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDFLKDDCLKINCTVGVVASAIDCS---RLHSIQVPESDIGDHFGMLLENEESSDITFNVAGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKGLLHFIY 814
            + +  S+ +TI  +S  +   +G+ I S  FS G     +W +   P G + E++  Y+S+++ L S   ++VRA F+ ++++  G+          +++ES       +G  WG+K+F RR  L  E +  L DD L + C V VV  +++ S    ++ ++VPE  + D  G L EN   +D    VAG++F AHK +LAARSPVF   F   MEE   + + + D+EP VFK ++ FIY
Sbjct:   28 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIY 259
[Close]
BLAST of DN617839 vs. ExPASy Swiss-Prot
Match: SPOPB_XENLA (Speckle-type POZ protein B OS=Xenopus laevis GN=spop-B PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 80/242 (33.06%), Postives = 131/242 (54.13%), Query Frame = 2 
Query:  119 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDFLKDDCLKINCTVGVVASAIDCS---RLHSIQVPESDIGDHFGMLLENEESSDITFNVAGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKGLLHFIY 814
            + +  S+ +TI  +S  +   +G+ I S  FS G     +W +   P G + E++  Y+S+++ L S   ++VRA F+ ++++  G+          +++ES       +G  WG+K+F RR  L  E +  L DD L + C V VV  +++ S    ++ ++VPE  + D  G L EN   +D    VAG++F AHK +LAARSPVF   F   MEE   + + + D+EP VFK ++ FIY
Sbjct:   28 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLSDELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIY 259
[Close]
BLAST of DN617839 vs. ExPASy Swiss-Prot
Match: SPOPA_XENLA (Speckle-type POZ protein A OS=Xenopus laevis GN=spop-A PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.528e-26
Identity = 80/242 (33.06%), Postives = 131/242 (54.13%), Query Frame = 2 
Query:  119 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDFLKDDCLKINCTVGVVASAIDCS---RLHSIQVPESDIGDHFGMLLENEESSDITFNVAGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKGLLHFIY 814
            + +  S+ +TI  +S  +   +G+ I S  FS G     +W +   P G + E++  Y+S+++ L S   ++VRA F+ ++++  G+          +++ES       +G  WG+K+F RR  L  E +  L DD L + C V VV  +++ S    ++ ++VPE  + D  G L EN   +D    VAG++F AHK +LAARSPVF   F   MEE   + + + D+EP VFK ++ FIY
Sbjct:   28 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEIKDVEPDVFKEMMCFIY 259
[Close]
BLAST of DN617839 vs. ExPASy Swiss-Prot
Match: SPOP_DANRE (Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.795e-25
Identity = 77/242 (31.82%), Postives = 132/242 (54.55%), Query Frame = 2 
Query:  119 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDFLKDDCLKINCTVGVVASAIDCS---RLHSIQVPESDIGDHFGMLLENEESSDITFNVAGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKGLLHFIY 814
            + +  S+ +TI  +S  +   +G+ I S  FS G     +W +   P G + E++  Y+S+++ L S   ++VRA F+ ++++  G+          +++ES       +G  WG+K+F RR  L  E +  L DD L + C V VV  +++ S    ++ ++VP+  + D  G L E+   +D +  VAG++F AHK +LAARSPVF   F   MEE   + + + D+E +VFK ++ FIY
Sbjct:   28 KVVKFSYMWTINNFSFCRE-EMGEVIKSSTFSSGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCPKSEVRAKFKFSILNAKGEET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPDCRLADELGGLWEHSRFTDCSLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEAEVFKEMMFFIY 259
[Close]
BLAST of DN617839 vs. ExPASy Swiss-Prot
Match: RDX_DROME (Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.795e-25
Identity = 78/242 (32.23%), Postives = 132/242 (54.55%), Query Frame = 2 
Query:  119 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDFLKDDCLKINCTVGVVASAIDCSRLHSI---QVPESDIGDHFGMLLENEESSDITFNVAGEKFHAHKLVLAARSPVFETEFLDAMEEDN-HEIVVTDMEPKVFKGLLHFIY 814
            + +  S+ +TI  +S  +   +G+ + S  FS G     +W +   P G + E++  Y+S+++ L S   ++VRA F+ ++++   +          +++ES       +G  WG+K+F RR  L  E +  L +D L I C V VVA +++ S   +I   +VPE  + +  G L +NE+ SD+T +V G +F AHK +LAARS VF   F   MEE   + + +TD++ +V K +L FIY
Sbjct:  483 KVVKFSYMWTINNFSFCRE-EMGEVLKSSTFSAGANDKLKWCLRVNPKGLD-EESKDYLSLYLLLVSCNKSEVRAKFKFSILNAKREET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFSDVTLSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIY 714
[Close]
BLAST of DN617839 vs. ExPASy Swiss-Prot
Match: SPOPL_HUMAN (Speckle-type POZ protein-like OS=Homo sapiens GN=SPOPL PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 8.131e-25
Identity = 78/242 (32.23%), Postives = 130/242 (53.72%), Query Frame = 2 
Query:  119 QTINGSHHFTIKGYSLSKGIGIGKHIASDNFSVGG---YQWAIYFYPDGKNPEDNSTYVSVFIALAS-EGTDVRALFELTLVDQSGKGKHKVHSHFDRSLESGPYTLKYRGSMWGYKRFFRRAML--ETSDFLKDDCLKINCTVGVVASAIDCS---RLHSIQVPESDIGDHFGMLLENEESSDITFNVAGEKFHAHKLVLAARSPVFETEFLDAMEED-NHEIVVTDMEPKVFKGLLHFIY 814
            + +  S+ +TI  +S  +   +G+ + S  FS G     +W +   P G + E    Y+S+++ L S   ++VRA F+ +L++   +          +++ES       +G  WG+K+F RR  L  E +  L DD L + C V VV  +++ S     ++++VPE  + +  G L EN   +D +F V G++F AHK VLAARSPVF   F   MEE   + + + D++P+VFK ++ FIY
Sbjct:   28 KVVKFSYMWTINNFSFCRE-EMGEVLKSSTFSSGPSDKMKWCLRVNPKGLDDESKD-YLSLYLLLVSCPKSEVRAKFKFSLLNAKREET--------KAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGHTNTNTLKVPECRLAEDLGNLWENTRFTDCSFFVRGQEFKAHKSVLAARSPVFNAMFEHEMEESKKNRVEINDLDPEVFKEMMRFIY 259
The following BLAST results are available for this feature:
BLAST of DN617839 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
SPOP_PONAB1.135e-2633.06Speckle-type POZ protein OS=Pongo abelii GN=SPOP P... [more]
SPOP_MOUSE1.135e-2633.06Speckle-type POZ protein OS=Mus musculus GN=Spop P... [more]
SPOP_HUMAN1.135e-2633.06Speckle-type POZ protein OS=Homo sapiens GN=SPOP P... [more]
SPOP_BOVIN1.135e-2633.06Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=... [more]
SPOP_XENTR2.528e-2633.06Speckle-type POZ protein OS=Xenopus tropicalis GN=... [more]
SPOPB_XENLA2.528e-2633.06Speckle-type POZ protein B OS=Xenopus laevis GN=sp... [more]
SPOPA_XENLA2.528e-2633.06Speckle-type POZ protein A OS=Xenopus laevis GN=sp... [more]
SPOP_DANRE2.795e-2531.82Speckle-type POZ protein OS=Danio rerio GN=spop PE... [more]
RDX_DROME2.795e-2532.23Protein roadkill OS=Drosophila melanogaster GN=rdx... [more]
SPOPL_HUMAN8.131e-2532.23Speckle-type POZ protein-like OS=Homo sapiens GN=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01M03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001M03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617839 ID=DN617839; Name=DN617839; organism=Citrus sinensis; type=EST; length=841bp
GGGCCTTCCTCCAAACTGTAGAGTCTAAACAGGAAAGAAAATGCAAAACG
CACCATCTCCCTCCCCATCGCCCACAACAACACCCCTGTCTTCGCCGACA
TCATCCCTCTCCCTGACCCAGACCATCAACGGGTCCCATCACTTCACCAT
AAAGGGCTACTCCCTCTCCAAGGGCATTGGCATCGGCAAGCACATCGCCA
GCGATAACTTCTCCGTCGGCGGCTACCAGTGGGCCATCTATTTCTACCCC
GACGGCAAGAATCCCGAAGACAACTCCACCTATGTCTCCGTGTTCATTGC
CCTAGCCAGCGAGGGCACCGACGTAAGGGCGCTCTTCGAGCTCACCCTTG
TTGATCAGAGTGGCAAAGGGAAGCACAAGGTCCATTCCCATTTCGATCGT
TCCTTGGAGAGTGGGCCCTATACCCTTAAATACCGCGGCAGCATGTGGGG
CTACAAGCGTTTTTTTAGGCGGGCTATGCTTGAAACATCAGATTTTCTCA
AGGATGATTGCTTGAAAATTAATTGCACAGTTGGTGTCGTGGCTTCTGCA
ATAGATTGCTCGAGATTGCACTCCATACAGGTTCCTGAATCTGATATAGG
AGATCATTTTGGTATGTTATTGGAAAATGAGGAGAGTTCAGATATTACTT
TTAATGTTGCTGGTGAAAAGTTCCATGCTCATAAGTTGGTATTGGCTGCT
CGGTCTCCTGTATTCGAAACTGAATTTTTGGATGCAATGGAGGAAGATAA
TCACGAAATAGTTGTTACAGATATGGAACCTAAGGTTTTTAAGGGCTTGT
TACACTTCATATACAAAGATACTCTTATTGAGGATGGGGAG
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