DN617829

Overview
NameDN617829
Unique NameDN617829
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8458 contig Csv1_Contig8458:7..582. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 7.759e-85
Identity = 152/175 (86.86%), Postives = 168/175 (96.00%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGIDL+AGGKSKK+KRTAPKSDD+YLKLLVKLYRFLVRR++SNFN VILKRLFMSKVNK PLSLSRL+ FM GK+DKIAV+VGT+TDD+R +E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE+
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLLVKLYRFLVRRSNSNFNAVILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFEK 175          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 312.768 bits (800), Expect = 7.759e-85
Identity = 152/175 (86.86%), Postives = 167/175 (95.43%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGIDL+AGGKSKK+KRTAPKSDD+YLKL VKLYRFLVRRT+S FN VILKRLFMSKVNK PLSLSRL+ FM GKEDKIAV+VGT+TDD+R +E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE+
Sbjct:    1 MGIDLIAGGKSKKTKRTAPKSDDVYLKLTVKLYRFLVRRTNSKFNGVILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFEK 175          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 296.204 bits (757), Expect = 7.516e-80
Identity = 148/172 (86.05%), Postives = 161/172 (93.60%), Query Frame = 2
Query:   59 DLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            DL AGGK+KK+KRT+PKS+DIYLKLLVKLYRFLVRRTDSNFN VILKRLFMSKVN+PPLSLSRLI +M+GKE KI VVVG VTDDIR Y+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE+
Sbjct:    1 DLKAGGKNKKTKRTSPKSNDIYLKLLVKLYRFLVRRTDSNFNAVILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEK 171          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 278.1 bits (710), Expect = 2.118e-74
Identity = 139/175 (79.43%), Postives = 153/175 (87.43%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 571
            MGIDL+AGGKSKK+KRT PKSDD+YLKLLVK  R+LVRRT+S FN VILKRLFMSKVNK PLSLSRL+ +M GK+ KIAV+VGTVTDD+R  +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G+K E
Sbjct:    1 MGIDLIAGGKSKKTKRTEPKSDDVYLKLLVKANRYLVRRTESKFNAVILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIE 175          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3)

HSP 1 Score: 237.654 bits (605), Expect = 3.172e-62
Identity = 120/177 (67.80%), Postives = 140/177 (79.10%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MG+D +   K +K  RT PKS DIYL+LLVKLYRFL RR+D+ FNKV+LKRLFMSK N+PPL+LSRLI  MK  G+E+KIAVVVGT+TDD+R   +P LKV ALR T  AR RI KAGG+ +TFDQLA+  P GQ TVLL GP+ ARE  +HFG APG PHSHTKPY+RSKGRKFER
Sbjct:    1 MGVD-IRHNKDRKVHRTEPKSQDIYLRLLVKLYRFLARRSDAPFNKVVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFER 176          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 7.067e-62
Identity = 119/177 (67.23%), Postives = 143/177 (80.79%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID +     +K +RT PKS D+YL+LLVKLYR+L RRT + FNK+ILKRLFMSK+ +PP+SLS+++ FMK  G+E   AV+VGTVTDD R +E+P L + ALR T+TARA I KAGGE +TFDQLALR+P G  TVLL+G +NAREAVKHFGPAPGVPHSH KP VRSKGRKFER
Sbjct:    1 MGID-INHKYDRKVRRTEPKSQDVYLRLLVKLYRYLARRTGAKFNKIILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFER 176          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 236.113 bits (601), Expect = 9.230e-62
Identity = 120/177 (67.80%), Postives = 141/177 (79.66%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGTVTDD+R  EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFER
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_RAT (60S ribosomal protein L18 OS=Rattus norvegicus GN=Rpl18 PE=2 SV=2)

HSP 1 Score: 235.728 bits (600), Expect = 1.205e-61
Identity = 119/177 (67.23%), Postives = 141/177 (79.66%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGT+TDD+R  EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFER
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 1.574e-61
Identity = 117/177 (66.10%), Postives = 147/177 (83.05%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MGID +     +K  R  PKS+++YL LLVK+YRFL RR+ + FN+++LKRLFMS++NKP +SL+R+  FMK  G+E+ IAVVVGTVTDD+R Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVRSKGRKFER
Sbjct:    1 MGID-INHKYDRKVVRRRPKSENVYLGLLVKVYRFLARRSGAKFNRIVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFER 176          
BLAST of DN617829 vs. ExPASy Swiss-Prot
Match: RL18_MACFA (60S ribosomal protein L18 OS=Macaca fascicularis GN=RPL18 PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.507e-61
Identity = 119/177 (67.23%), Postives = 140/177 (79.10%), Query Frame = 2
Query:   50 MGIDLVAGGKSKKSKRTAPKSDDIYLKLLVKLYRFLVRRTDSNFNKVILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFER 574
            MG+D +   K +K +R  PKS DIYL+LLVKLYRFL RRT+S FN+V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGT+TDD+R  EVP LKV ALR T  AR+RI +AGG+ LTFDQLAL +P G  TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFER
Sbjct:    1 MGVD-IRHNKDRKVRRKEPKSQDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVTSRARSRILRAGGKILTFDQLALDSPKGCGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFER 176          
The following BLAST results are available for this feature:
BLAST of DN617829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL183_ARATH7.759e-8586.8660S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL182_ARATH7.759e-8586.8660S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL18_CICAR7.516e-8086.0560S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH2.118e-7479.43Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_ICTPU3.172e-6267.8060S ribosomal protein L18 OS=Ictalurus punctatus G... [more]
RL18_TIMBA7.067e-6267.2360S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_MOUSE9.230e-6267.8060S ribosomal protein L18 OS=Mus musculus GN=Rpl18... [more]
RL18_RAT1.205e-6167.2360S ribosomal protein L18 OS=Rattus norvegicus GN=... [more]
RL18_IXOSC1.574e-6166.1060S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL18_MACFA3.507e-6167.2360S ribosomal protein L18 OS=Macaca fascicularis G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L22_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617829 ID=DN617829; Name=DN617829; organism=Citrus sinensis; type=EST; length=576bp
TGAACACTTACCCGCCGCGCCAGCGCCCAGCCACTCGCCAACCGTCGCCA
TGGGTATCGATTTGGTCGCAGGAGGTAAGAGCAAGAAGTCCAAGAGAACC
GCTCCCAAGTCCGATGATATCTACCTTAAGCTCCTCGTCAAGTTGTACCG
GTTTCTTGTTCGAAGAACCGACAGCAACTTTAATAAAGTGATTCTGAAGA
GGCTGTTTATGAGTAAAGTCAACAAGCCACCACTTTCACTCTCAAGGCTC
ATCAACTTCATGAAGGGAAAGGAGGATAAGATTGCGGTGGTAGTGGGGAC
AGTCACCGATGACATTAGGGCTTATGAGGTGCCGGCATTGAAGGTTACTG
CTTTGAGGTTTACTGAGACTGCAAGAGCTCGGATTGAGAAGGCAGGCGGA
GAGTGCTTGACTTTTGATCAGCTTGCTCTCAGGGCTCCATTGGGACAGAA
CACGGTCCTTCTTAGAGGTCCAAAGAATGCTCGTGAGGCAGTGAAGCACT
TTGGTCCAGCTCCTGGTGTACCACACAGCCACACCAAGCCTTACGTGCGA
TCAAAGGGAAGGAAGTTTGAGCGTGC
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