DN617828

Overview
NameDN617828
Unique NameDN617828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL182_ARATH (60S ribosomal protein L18-2 OS=Arabidopsis thaliana GN=RPL18B PE=2 SV=2)

HSP 1 Score: 234.187 bits (596), Expect = 3.902e-61
Identity = 113/128 (88.28%), Postives = 123/128 (96.09%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            VILKRLFMSKVNK PLSLSRL+ FM GKEDKIAV+VGT+TDD+R +E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHSH+KPYVR+KGRKFE
Sbjct:   47 VILKRLFMSKVNKAPLSLSRLVEFMTGKEDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSHSKPYVRAKGRKFE 174          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL183_ARATH (60S ribosomal protein L18-3 OS=Arabidopsis thaliana GN=RPL18C PE=2 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 3.303e-60
Identity = 112/128 (87.50%), Postives = 122/128 (95.31%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            VILKRLFMSKVNK PLSLSRL+ FM GK+DKIAV+VGT+TDD+R +E+PA+KVTALRFTE ARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKN+REAVKHFGPAPGVPHS+TKPYVR KGRKFE
Sbjct:   47 VILKRLFMSKVNKAPLSLSRLVEFMTGKDDKIAVLVGTITDDLRVHEIPAMKVTALRFTERARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNSREAVKHFGPAPGVPHSNTKPYVRHKGRKFE 174          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_CICAR (60S ribosomal protein L18 (Fragment) OS=Cicer arietinum GN=RPL18 PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.175e-57
Identity = 111/128 (86.72%), Postives = 119/128 (92.97%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            VILKRLFMSKVN+PPLSLSRLI +M+GKE KI VVVG VTDDIR Y+VP +KVTAL+FTETARARI+KAGGECLTFDQLALR PL  +TVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE
Sbjct:   44 VILKRLFMSKVNRPPLSLSRLIKYMQGKEGKIGVVVGAVTDDIRVYDVPTIKVTALKFTETARARIQKAGGECLTFDQLALRLPL-TDTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 170          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL181_ARATH (Putative 60S ribosomal protein L18-1 OS=Arabidopsis thaliana GN=RPL18A PE=2 SV=3)

HSP 1 Score: 206.068 bits (523), Expect = 1.138e-52
Identity = 103/129 (79.84%), Postives = 112/129 (86.82%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMKGKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPL-GQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            VILKRLFMSKVNK PLSLSRL+ +M GK+ KIAV+VGTVTDD+R  +VPAL VTALRFTE+ARARI KAGGECLTFDQLAL  P   +NTVLLRGPKN REAVKHFGPAPGVPHSHTKPYVR  G+K E
Sbjct:   47 VILKRLFMSKVNKAPLSLSRLVRYMDGKDGKIAVIVGTVTDDVRIEDVPALTVTALRFTESARARIHKAGGECLTFDQLALPCPTWSENTVLLRGPKNTREAVKHFGPAPGVPHSHTKPYVRQTGKKIE 175          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_IXOSC (60S ribosomal protein L18 OS=Ixodes scapularis GN=RpL18 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.302e-48
Identity = 93/130 (71.54%), Postives = 114/130 (87.69%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            ++LKRLFMS++NKP +SL+R+  FMK  G+E+ IAVVVGTVTDD+R Y+VP L++ ALR TE ARARI KAGGE LTFDQLA++AP G+ TVL++GP+N+REA +HFGPAPGVPHSHTKPYVRSKGRKFE
Sbjct:   46 IVLKRLFMSRINKPVISLARVTRFMKKPGRENLIAVVVGTVTDDLRLYDVPKLRLCALRVTERARARILKAGGEILTFDQLAVQAPKGKGTVLMQGPRNSREACRHFGPAPGVPHSHTKPYVRSKGRKFE 175          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_TIMBA (60S ribosomal protein L18 OS=Timarcha balearica GN=RpL18 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.546e-46
Identity = 91/130 (70.00%), Postives = 108/130 (83.08%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            +ILKRLFMSK+ +PP+SLS+++ FMK  G+E   AV+VGTVTDD R +E+P L + ALR T+TARA I KAGGE +TFDQLALR+P G  TVLL+G +NAREAVKHFGPAPGVPHSH KP VRSKGRKFE
Sbjct:   46 IILKRLFMSKIYRPPISLSKVVRFMKKPGRELLTAVIVGTVTDDSRIFEIPKLSICALRVTQTARAGILKAGGEVITFDQLALRSPTGSKTVLLQGKRNAREAVKHFGPAPGVPHSHAKPLVRSKGRKFE 175          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_ICTPU (60S ribosomal protein L18 OS=Ictalurus punctatus GN=rpl18 PE=2 SV=3)

HSP 1 Score: 181.415 bits (459), Expect = 3.002e-45
Identity = 90/130 (69.23%), Postives = 104/130 (80.00%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            V+LKRLFMSK N+PPL+LSRLI  MK  G+E+KIAVVVGT+TDD+R   +P LKV ALR T  AR RI KAGG+ +TFDQLA+  P GQ TVLL GP+ ARE  +HFG APG PHSHTKPY+RSKGRKFE
Sbjct:   46 VVLKRLFMSKTNRPPLALSRLIRKMKLQGRENKIAVVVGTITDDVRILNIPKLKVCALRVTAGARRRILKAGGQVMTFDQLAVTTPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYIRSKGRKFE 175          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_ORENI (60S ribosomal protein L18 OS=Oreochromis niloticus GN=rpl18 PE=2 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 3.920e-45
Identity = 88/130 (67.69%), Postives = 107/130 (82.31%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            V+L+RLFMS+ N+PP+++SRLI  MK  G+E+KIAVVVGTVTDD+R  ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +HFG APG PHSHTKPYVRSKGRKFE
Sbjct:   46 VVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_OREMO (60S ribosomal protein L18 OS=Oreochromis mossambicus GN=rpl18 PE=3 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 3.920e-45
Identity = 88/130 (67.69%), Postives = 107/130 (82.31%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            V+L+RLFMS+ N+PP+++SRLI  MK  G+E+KIAVVVGTVTDD+R  ++P LK+ ALR T+ AR RI KAGG+ +TFDQLAL +P GQ TVLL GP+ ARE  +HFG APG PHSHTKPYVRSKGRKFE
Sbjct:   46 VVLRRLFMSRTNRPPIAVSRLIRKMKLPGRENKIAVVVGTVTDDVRIQDIPKLKICALRVTDGARRRILKAGGQVMTFDQLALASPKGQGTVLLSGPRKAREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175          
BLAST of DN617828 vs. ExPASy Swiss-Prot
Match: RL18_MOUSE (60S ribosomal protein L18 OS=Mus musculus GN=Rpl18 PE=2 SV=3)

HSP 1 Score: 181.03 bits (458), Expect = 3.920e-45
Identity = 91/130 (70.00%), Postives = 105/130 (80.77%), Query Frame = -2
Query:  218 VILKRLFMSKVNKPPLSLSRLINFMK--GKEDKIAVVVGTVTDDIRAYEVPALKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFE 601
            V+LKRLFMS+ N+PPLSLSR+I  MK  G+E+K AVVVGTVTDD+R  EVP LKV ALR +  AR+RI KAGG+ LTFDQLAL +P G+ TVLL GP+  RE  +HFG APG PHSHTKPYVRSKGRKFE
Sbjct:   46 VVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTVTDDVRILEVPKLKVCALRVSSRARSRILKAGGKILTFDQLALESPKGRGTVLLSGPRKGREVYRHFGKAPGTPHSHTKPYVRSKGRKFE 175          
The following BLAST results are available for this feature:
BLAST of DN617828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
RL182_ARATH3.902e-6188.2860S ribosomal protein L18-2 OS=Arabidopsis thalian... [more]
RL183_ARATH3.303e-6087.5060S ribosomal protein L18-3 OS=Arabidopsis thalian... [more]
RL18_CICAR1.175e-5786.7260S ribosomal protein L18 (Fragment) OS=Cicer arie... [more]
RL181_ARATH1.138e-5279.84Putative 60S ribosomal protein L18-1 OS=Arabidopsi... [more]
RL18_IXOSC1.302e-4871.5460S ribosomal protein L18 OS=Ixodes scapularis GN=... [more]
RL18_TIMBA3.546e-4670.0060S ribosomal protein L18 OS=Timarcha balearica GN... [more]
RL18_ICTPU3.002e-4569.2360S ribosomal protein L18 OS=Ictalurus punctatus G... [more]
RL18_ORENI3.920e-4567.6960S ribosomal protein L18 OS=Oreochromis niloticus... [more]
RL18_OREMO3.920e-4567.6960S ribosomal protein L18 OS=Oreochromis mossambic... [more]
RL18_MOUSE3.920e-4570.0060S ribosomal protein L18 OS=Mus musculus GN=Rpl18... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01L22_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617828 ID=DN617828; Name=DN617828; organism=Citrus sinensis; type=EST; length=602bp
CCCCTTTTTTTTAATTGAACATAATAAAATTTGCATCTCAAAACAGGGCA
NTCCGTTGTCATGGTAAACAAACCAACAGTAAGAAAAATAGGGAACCATA
ATTGATACCTAGAGTCTAGCAAAATTTCAATCACGATAGTAAGAAATGAC
ACAACTGCCTCACAATTTAGTAAACTTAAACTCTGAAACCCCTGCTGTTC
CTCCTTCCTCTAGCACGCTCAAACTTCCTTCCCTTTGATCGCACGTAAGG
CTTGGTGTGGCTGTGTGGTACACCAGGAGCTGGACCAAAGTGCTTCACTG
CCTCACGAGCATTCTTTGGACCTCTAAGAAGGACCGTGTTCTGTCCCAAT
GGAGCCCTGAGAGCAAGCTGATCAAAAGTCAAGCACTCTCCGCCTGCCTT
CTCAATCCGAGCTCTTGCAGTCTCAGTAAACCTCAAAGCAGTAACCTTCA
ATGCCGGCACCTCATAAGCCCTAATGTCATCGGTGACTGTCCCCACTACC
ACCGCAATCTTATCCTCCTTTCCCTTCATGAAGTTGATGAGCCTTGAGAG
TGAAAGTGGTGGCTTGTTGACTTTACTCATAAACAGCCTCTTCAGAATCA
CT
back to top