DN617823

Overview
NameDN617823
Unique NameDN617823
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617823_ssr541 microsatellite DN617823_ssr541:541..552. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10452 contig Csv1_Contig10452:326..929. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617823 vs. ExPASy Swiss-Prot
Match: NACA2_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 2 OS=Arabidopsis thaliana GN=At3g49470 PE=2 SV=2)

HSP 1 Score: 110.923 bits (276), Expect = 4.982e-24
Identity = 55/78 (70.51%), Postives = 62/78 (79.49%), Query Frame = 3
Query:  300 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPD 533
            AMLKLGMKPVTGVSRVTIKRTKN+LFFISKPDVFKSP+SETYVIFGEAKIED            FRMP++G+   + +
Sbjct:   79 AMLKLGMKPVTGVSRVTIKRTKNVLFFISKPDVFKSPHSETYVIFGEAKIEDLSSQLQTQAAQQFRMPEIGATSQRAE 156          
BLAST of DN617823 vs. ExPASy Swiss-Prot
Match: NACA4_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 4 OS=Arabidopsis thaliana GN=At4g10480 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.603e-22
Identity = 53/78 (67.95%), Postives = 60/78 (76.92%), Query Frame = 3
Query:  300 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPD 533
            AMLKLGMKPVT VSRVTIKR+KN+LF ISKPDVFKSPNSETYVIFGEAKI+D            F+MPD+ S++   D
Sbjct:   74 AMLKLGMKPVTDVSRVTIKRSKNVLFVISKPDVFKSPNSETYVIFGEAKIDDMSSQLQAQAAQRFKMPDVASMIPNTD 151          
BLAST of DN617823 vs. ExPASy Swiss-Prot
Match: NACA1_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 1 OS=Arabidopsis thaliana GN=At3g12390 PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.357e-21
Identity = 50/76 (65.79%), Postives = 60/76 (78.95%), Query Frame = 3
Query:  300 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAK 527
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED            F+ PD+ +V++K
Sbjct:   69 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQIQSQAAEQFKAPDLSNVISK 144          
BLAST of DN617823 vs. ExPASy Swiss-Prot
Match: NACA3_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 3 OS=Arabidopsis thaliana GN=At5g13850 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.500e-20
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 3
Query:  300 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAK 527
            AMLKLGMKP+TGVSRVT+K++KNILF ISKPDVFKSP S+TYVIFGEAKIED            F+ P++ +V+++
Sbjct:   65 AMLKLGMKPITGVSRVTVKKSKNILFVISKPDVFKSPASDTYVIFGEAKIEDLSSQLQSQAAEQFKAPNLSNVISQ 140          
BLAST of DN617823 vs. ExPASy Swiss-Prot
Match: NACA_PINTA (Nascent polypeptide-associated complex subunit alpha-like protein OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 3
Query:  300 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVMAKPD 533
            AMLKLGMKPV+GVSRVTIK++KNILF IS PDVFKSP S+TY+ FGEAKIED            F+ P++  V  KP+
Sbjct:   72 AMLKLGMKPVSGVSRVTIKKSKNILFVISNPDVFKSPTSDTYIAFGEAKIEDLSSQLQTQAAEQFKAPNLSHVTMKPE 149          
BLAST of DN617823 vs. ExPASy Swiss-Prot
Match: NACA5_ARATH (Nascent polypeptide-associated complex subunit alpha-like protein 5 OS=Arabidopsis thaliana GN=At1g33040 PE=2 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 4.364e-20
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 3
Query:  300 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVM 521
            A+LKLGMKPV+ VSRVTIKR KN+LF ISKPDV+KSPN+ETYVIFGEAK++D            F+MPD+ S++
Sbjct:   71 AVLKLGMKPVSDVSRVTIKRAKNVLFVISKPDVYKSPNAETYVIFGEAKVDDLSSQLQTQAAQRFKMPDVTSML 144          
BLAST of DN617823 vs. ExPASy Swiss-Prot
Match: NACA_ORENI (Nascent polypeptide-associated complex subunit alpha OS=Oreochromis niloticus GN=naca PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 8.518e-16
Identity = 39/68 (57.35%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  300 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMP 503
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED            F++P
Sbjct:   79 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVP 146          
BLAST of DN617823 vs. ExPASy Swiss-Prot
Match: NACAD_MOUSE (NAC-alpha domain-containing protein 1 OS=Mus musculus GN=Nacad PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 3
Query:  300 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVM 521
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED            F++P   S +
Sbjct: 1363 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSAL 1436          
BLAST of DN617823 vs. ExPASy Swiss-Prot
Match: NACAD_HUMAN (NAC-alpha domain-containing protein 1 OS=Homo sapiens GN=NACAD PE=2 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.898e-15
Identity = 39/74 (52.70%), Postives = 53/74 (71.62%), Query Frame = 3
Query:  300 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIEDXXXXXXXXXXXXFRMPDMGSVM 521
            AM KLG++ + GV+R+TI+++KNILF I+KPDVFKSP S+TYV+FGEAKIED            F++P   S +
Sbjct: 1420 AMSKLGLRQIQGVTRITIQKSKNILFVIAKPDVFKSPASDTYVVFGEAKIEDLSQQVHKAAAEKFKVPSEPSAL 1493          
BLAST of DN617823 vs. ExPASy Swiss-Prot
Match: NACA_XENTR (Nascent polypeptide-associated complex subunit alpha OS=Xenopus tropicalis GN=naca PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.478e-15
Identity = 37/52 (71.15%), Postives = 48/52 (92.31%), Query Frame = 3
Query:  300 AMLKLGMKPVTGVSRVTIKRTKNILFFISKPDVFKSPNSETYVIFGEAKIED 455
            AM KLG++ VTGV+RVTI+++KNILF I+KPDV+KSP S+TY++FGEAKIED
Sbjct:   78 AMSKLGLRQVTGVTRVTIRKSKNILFVITKPDVYKSPASDTYIVFGEAKIED 129          
The following BLAST results are available for this feature:
BLAST of DN617823 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
NACA2_ARATH4.982e-2470.51Nascent polypeptide-associated complex subunit alp... [more]
NACA4_ARATH1.603e-2267.95Nascent polypeptide-associated complex subunit alp... [more]
NACA1_ARATH1.357e-2165.79Nascent polypeptide-associated complex subunit alp... [more]
NACA3_ARATH1.500e-2063.16Nascent polypeptide-associated complex subunit alp... [more]
NACA_PINTA4.364e-2061.54Nascent polypeptide-associated complex subunit alp... [more]
NACA5_ARATH4.364e-2063.51Nascent polypeptide-associated complex subunit alp... [more]
NACA_ORENI8.518e-1657.35Nascent polypeptide-associated complex subunit alp... [more]
NACAD_MOUSE1.898e-1552.70NAC-alpha domain-containing protein 1 OS=Mus muscu... [more]
NACAD_HUMAN1.898e-1552.70NAC-alpha domain-containing protein 1 OS=Homo sapi... [more]
NACA_XENTR2.478e-1571.15Nascent polypeptide-associated complex subunit alp... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L19_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617823 ID=DN617823; Name=DN617823; organism=Citrus sinensis; type=EST; length=604bp
GGCAACCAAACCTAACAGAACAAAGTTATCCCTATCTATCGAGGCTAAAC
TAGAGAAAGCTTATCAATTTTATCAAAATGTCGCCACCAGCTCCCATCGT
TGAGACACCAGTCGAGGAACCTGAAAAAATTAAGCCTCAGGATGAGGATG
AGCCTGTAGTTGAAGATGTTAAGGACGACGAGGAAGAAGATGATGACCAC
GACAATGACGATGATGACGAGGACGACGATGACAACAAAGACGATGGAGC
TCAAGGTGGGAGTTCAAAGCAGAGCAGAAGTGAGAAAAAGAGCCGCAAGG
CAATGCTGAAGTTGGGCATGAAACCTGTAACAGGAGTTAGCAGGGTAACC
ATCAAGAGAACCAAAAATATACTATTTTTCATCTCAAAGCCTGATGTTTT
CAAGAGCCCAAATTCTGAAACATACGTCATATTTGGGGAAGCCAAAATAG
AGGATTTGAGCACCCAGCTGCAGACACAGGCTGCCCAGCAGTTCAGGATG
CCTGACATGGGATCGGTGATGGCGAAACCAGATGCCTCTTCTGCTGCTGC
TGGTGCACAACAAGATGAGGAAGAGGAGGAAGTTGATGAGACGGGAGTTG
AGCC
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