DN617817

Overview
NameDN617817
Unique NameDN617817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617817_ssr152 microsatellite DN617817_ssr152:152..163. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6928 contig Csv1_Contig6928:1261..1854. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: ASPR_CUCPE (Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 1.716e-53
Identity = 92/122 (75.41%), Postives = 109/122 (89.34%), Query Frame = -3
Query:  229 MAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 594
            M V+WMQN+LR+N+T ++I+NY+N+LCDR+PSP G+SAVDC  LSSMP VSFTIGGK+FDLAP EY+L+VGEG  AQCISGFTAFD+ PPRGPLWILGDVFMGRYHTVFD+G L +G AEAA
Sbjct:  392 MTVVWMQNQLRQNQTKERIINYINELCDRMPSPMGQSAVDCGQLSSMPTVSFTIGGKIFDLAPEEYILKVGEGPVAQCISGFTAFDIPPPRGPLWILGDVFMGRYHTVFDFGKLRVGSAEAA 513          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CYPR1_CYNCA (Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO1 PE=1 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 1.453e-52
Identity = 90/120 (75.00%), Postives = 109/120 (90.83%), Query Frame = -3
Query:  229 VIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 588
            V+WMQN++R+NET + I+NYV++LC+RLPSP GESAVDC +LSSMPN++FT+GGK F+L+P +YVL+VGEG  AQCISGFTA DVAPP GPLWILGDVFMG+YHTVFDYGNL +GFAEAA
Sbjct:  354 VVWMQNQIRQNETEENIINYVDKLCERLPSPMGESAVDCSSLSSMPNIAFTVGGKTFNLSPEQYVLKVGEGATAQCISGFTAMDVAPPHGPLWILGDVFMGQYHTVFDYGNLRVGFAEAA 473          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: ASPR1_ORYSJ (Aspartic proteinase oryzasin-1 OS=Oryza sativa subsp. japonica GN=Os05g0567100 PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 6.104e-51
Identity = 89/122 (72.95%), Postives = 106/122 (86.89%), Query Frame = -3
Query:  229 MAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 594
            MAV+WMQN+L +N+T D ILNY+NQLCD+LPSP GES+VDC +L+SMP +SFTIGGK F L P EY+L+VGEG AAQCISGFTA D+ PPRGPLWILGDVFMG YHTVFDYG + +GFA++A
Sbjct:  388 MAVVWMQNQLAQNKTQDLILNYINQLCDKLPSPMGESSVDCGSLASMPEISFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGAYHTVFDYGKMRVGFAKSA 509          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: ASPR_HORVU (Phytepsin OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.041e-50
Identity = 92/122 (75.41%), Postives = 105/122 (86.07%), Query Frame = -3
Query:  229 MAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 594
            MAV+WMQN+L +N+T D IL+YVNQLC+RLPSP GESAVDC +L SMP++ FTIGGK F L P EY+L+VGEG AAQCISGFTA D+ PPRGPLWILGDVFMG YHTVFDYG L IGFA+AA
Sbjct:  387 MAVVWMQNQLAQNKTQDLILDYVNQLCNRLPSPMGESAVDCGSLGSMPDIEFTIGGKKFALKPEEYILKVGEGAAAQCISGFTAMDIPPPRGPLWILGDVFMGPYHTVFDYGKLRIGFAKAA 508          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: ASPRX_ORYSJ (Aspartic proteinase OS=Oryza sativa subsp. japonica GN=RAP PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 7.990e-43
Identity = 76/122 (62.30%), Postives = 96/122 (78.69%), Query Frame = -3
Query:  229 MAVIWMQNKLRRNETADQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 594
            MAV+W++N+LR N+T + ILNY NQLC+RLPSPNGES V C  +S MPN++FTI  K F L P +Y++++ +G    CISGF AFD+ PPRGPLWILGDVFMG YHTVFD+G   IGFA++A
Sbjct:  375 MAVVWIENQLRENKTKELILNYANQLCERLPSPNGESTVSCHQISKMPNLAFTIANKTFILTPEQYIVKLEQGGQTVCISGFMAFDIPPPRGPLWILGDVFMGAYHTVFDFGKDRIGFAKSA 496          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: ASPP_AEDAE (Lysosomal aspartic protease OS=Aedes aegypti GN=AAEL006169 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 4.123e-23
Identity = 49/99 (49.49%), Postives = 63/99 (63.64%), Query Frame = -3
Query:  232 VNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 528
            +N+     P  NGE  VDC  +  +P +SF +GGK FDL   +YVL V +     C+SGF   D+ PP GPLWILGDVF+G+Y+T FD GN  +GFA A
Sbjct:  288 INKAIGGTPIMNGEYMVDCSLIPKLPKISFVLGGKSFDLEGADYVLRVAQMGKTICLSGFMGIDIPPPNGPLWILGDVFIGKYYTEFDMGNDRVGFATA 386          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATE_RANCA (Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 51/103 (49.51%), Postives = 68/103 (66.02%), Query Frame = -3
Query:  238 DQILNYVNQLCDRLPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFA 546
            +Q+ NY+      + + NGE  V C  LS MP+V+FTI G  + L P +Y+LE G G    C SGF   D++PP GPLWILGDVF+G+Y++VFD GN  +GFA
Sbjct:  291 EQLQNYIG-----VTNTNGEYGVSCSTLSLMPSVTFTINGLDYSLTPEQYMLEDGGGY---CSSGFQGLDISPPSGPLWILGDVFIGQYYSVFDRGNNRVGFA 385          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_HUMAN (Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.046e-22
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = -3
Query:  229 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEAA 507
            +P   GE  + C+ +S++P ++  +GGK + L+P +Y L+V +     C+SGF   D+ PP GPLWILGDVF+GRY+TVFD  N  +GFAEAA
Sbjct:  318 VPLIQGEYMIPCEKVSTLPAITLKLGGKGYKLSPEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEAA 410          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: CATD_MOUSE (Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 45/92 (48.91%), Postives = 63/92 (68.48%), Query Frame = -3
Query:  232 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQCISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFAEA 507
            +P   GE  + C+ +SS+P V   +GGK ++L P++Y+L+V +G    C+SGF   D+ PP GPLWILGDVF+G Y+TVFD  N  +GFA A
Sbjct:  316 VPLIQGEYMIPCEKVSSLPTVYLKLGGKNYELHPDKYILKVSQGGKTICLSGFMGMDIPPPSGPLWILGDVFIGSYYTVFDRDNNRVGFANA 407          
BLAST of DN617817 vs. ExPASy Swiss-Prot
Match: ASP3_CAEEL (Aspartic protease 3 OS=Caenorhabditis elegans GN=asp-3 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 5.953e-22
Identity = 44/91 (48.35%), Postives = 64/91 (70.33%), Query Frame = -3
Query:  238 LPSPNGESAVDCDNLSSMPNVSFTIGGKVFDLAPNEYVLEVGEGVAAQ-CISGFTAFDVAPPRGPLWILGDVFMGRYHTVFDYGNLSIGFA 507
            +P  NGE  V+C  + S+PN++F +GG+ FDL   +Y+L++  G     C+SGF   D+  P GPLWILGDVF+GR+++VFD+GN  +GFA
Sbjct:  302 IPLFNGEYEVECSKIPSLPNITFNLGGQNFDLQGKDYILQMSNGNGGSTCLSGFMGMDIPAPAGPLWILGDVFIGRFYSVFDHGNKRVGFA 392          
The following BLAST results are available for this feature:
BLAST of DN617817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 71
Match NameE-valueIdentityDescription
ASPR_CUCPE1.716e-5375.41Aspartic proteinase OS=Cucurbita pepo PE=2 SV=1[more]
CYPR1_CYNCA1.453e-5275.00Cyprosin (Fragment) OS=Cynara cardunculus GN=CYPRO... [more]
ASPR1_ORYSJ6.104e-5172.95Aspartic proteinase oryzasin-1 OS=Oryza sativa sub... [more]
ASPR_HORVU1.041e-5075.41Phytepsin OS=Hordeum vulgare PE=1 SV=1[more]
ASPRX_ORYSJ7.990e-4362.30Aspartic proteinase OS=Oryza sativa subsp. japonic... [more]
ASPP_AEDAE4.123e-2349.49Lysosomal aspartic protease OS=Aedes aegypti GN=AA... [more]
CATE_RANCA2.046e-2249.51Cathepsin E OS=Rana catesbeiana GN=CTSE PE=1 SV=1[more]
CATD_HUMAN2.046e-2248.39Cathepsin D OS=Homo sapiens GN=CTSD PE=1 SV=1[more]
CATD_MOUSE5.953e-2248.91Cathepsin D OS=Mus musculus GN=Ctsd PE=1 SV=1[more]
ASP3_CAEEL5.953e-2248.35Aspartic protease 3 OS=Caenorhabditis elegans GN=a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L16_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617817 ID=DN617817; Name=DN617817; organism=Citrus sinensis; type=EST; length=596bp
TTTTTTTTGGTTTAATAGTAGAATGGCATTATGCTTTTAAACCTAAACCG
CACGGTTTAATAACCTTTCCGGATTCTAATAAAGTCCGATCCTGGACTGG
ATTATGATACACACACAGAGACACAAACACACACATATATATACACATAT
ATATGTATGTATGCATGTGTATATAATTATTACAACAAGCTAGTTATGGA
AATGGACGAAGCCAGTGGATTTTGTTCAAGCTGCTTCGGCGAATCCAATA
GACAAGTTGCCGTAGTCGAACACAGTGTGATAGCGACCCATGAAAACATC
TCCCAGAATCCAGAGAGGACCACGAGGAGGGGCCACATCGAAAGCAGTAA
ATCCACTGATGCATTGGGCTGCAACTCCCTCTCCCACTTCAAGAACATAC
TCATTCGGTGCAAGGTCAAATACTTTGCCACCAATTGTAAATGAAACATT
GGGCATGGAAGATAAATTGTCACAATCAACAGCTGATTCTCCATTTGGAC
TGGGCAGACGGTCACAAAGCTGATTTACATAATTCAAGATTTGATCTGCT
GTCTCATTTCTCCTCAGCTTGTTCTGCATCCATATGACCGCCATCT
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