DN617814

Overview
NameDN617814
Unique NameDN617814
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7741 contig Csv1_Contig7741:396..998. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617814 vs. ExPASy Swiss-Prot
Match: YGHX_ECOLI (Putative uncharacterized protein yghX OS=Escherichia coli (strain K12) GN=yghX PE=5 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 3.579e-14
Identity = 50/150 (33.33%), Postives = 74/150 (49.33%), Query Frame = -2 
Query:  156 DIHASVNWLKA--NGSKKVGVTGYCMGGALAIASSVLVPEVDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 599
            D  A++ +++     + KVG+TG+C GG ++ A++V  PE+   V FYG   P  AD  + +AP+  HF ELD  +     +          A+   YE +IYPG  H F N   D   R        +D +A +LAW R   W  +YLS
Sbjct:  145 DFFAAIEFMQRYPQATGKVGITGFCYGGGVSNAAAVAYPELACAVPFYGRQAP-TADVAKIEAPLLLHFAELDTRIN----EGWPAYEAALKANNKVYEAYIYPGVNHGFHN---DSTPR--------YDKSAADLAWQRTLKWFDKYLS 278
[Close]
BLAST of DN617814 vs. ExPASy Swiss-Prot
Match: USF_AQUPY (Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 49/149 (32.89%), Postives = 70/149 (46.98%), Query Frame = -2 
Query:  156 ASVNWLKA---NGSKKVGVTGYCMGGALAIASSVLVPE-VDAVVSFYGVPPPELADPTQAKAPVQAHFGELDNFVGFSDVKTXXXXXXXXXASGVPYEVHIYPGSAHAFMNISPDGVKRRKEMGMDDHDPAAVELAWSRFQSWMTRYLS 590
            ASV++LK       KKVGVTG+C GG L++  +   P+ +DA V FYG+P     D    K P+     E D FV   +V            +GV  +V +Y G  HAF+N          E   D +DP   + AW+   ++   YL+
Sbjct:   96 ASVDFLKECRYTSPKKVGVTGFCCGGTLSMYFAGKFPDLIDASVPFYGLPQITKIDAENIKVPIFFILAEKDEFVNNDEV---IDIAKKVWKNGVDVKVKVYSGVTHAFLN----------EKREDVYDPCRAQDAWNLTVAFFKEYLT 231
The following BLAST results are available for this feature:
BLAST of DN617814 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
YGHX_ECOLI3.579e-1433.33Putative uncharacterized protein yghX OS=Escherich... [more]
USF_AQUPY9.746e-1232.89Protein usf OS=Aquifex pyrophilus GN=usf PE=4 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01L15_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617814 ID=DN617814; Name=DN617814; organism=Citrus sinensis; type=EST; length=603bp
TTTTTTTTTTTTATCCCAGTATCGAACCCCTTTGGAAACAAAAGGATACT
TGCAGCTGTGTTATATGTAGAGTAGAGGCATACACACGGTTATTTATTTA
ATGATGGAAGCGAGGTAAACACCATAGATTCATAATACTAGTGAATTACT
TAAGCAGATAAGTAGCGGGTCATCCATGATTGGAAGCGAGACCACGCCAG
CTCAACTGCGGCTGGATCGTGATCATCCATTCCCATTTCTTTCCTCCTCT
TCACTCCATCCGGAGAAATGTTCATGAAAGCATGTGCACTGCCAGGATAA
ATATGTACCTCATATGGAACACCAGATGCTTTCAGCTTTTCCTCCAATGC
TTTGGCAGTTTTCACATCTGAAAAGCCAACAAAATTGTCAAGCTCCCCAA
AATGAGCTTGAACAGGTGCCTTAGCCTGGGTAGGATCGGCGAGCTCAGGT
GGGGGAACCCCATAAAATGAAACAACAGCATCAACCTCAGGAACTAAGAC
AGAACTTGCAATAGCGAGAGCACCTCCCATGCAATATCCAGTCACGCCAA
CCTTCTTGGAACCATTTGCCTTAAGCCAATTAACTGAAGCGTGGATATCC
TTG
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