DN617813

Overview
NameDN617813
Unique NameDN617813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12567 contig Csv1_Contig12567:852..1584. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_CITSI (Thiazole biosynthetic enzyme, chloroplastic OS=Citrus sinensis GN=THI1 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.897e-49
Identity = 100/104 (96.15%), Postives = 100/104 (96.15%), Query Frame = -2
Query:  413 GLLGATGVKR*XSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 724
            G  GATGVKR  SIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL
Sbjct:  242 GPFGATGVKRLKSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 345          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_ALNGL (Thiazole biosynthetic enzyme, chloroplastic OS=Alnus glutinosa GN=THI4 PE=2 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.655e-45
Identity = 91/104 (87.50%), Postives = 96/104 (92.31%), Query Frame = -2
Query:  413 GLLGATGVKR*XSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 724
            G  GATGVK   SIGMI+ VPGMKALDMN AEDAIVRLTRE+VPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG PNALDG+YVGG+HPELIL
Sbjct:  238 GPFGATGVKSLRSIGMIDTVPGMKALDMNVAEDAIVRLTREIVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGLPNALDGSYVGGIHPELIL 341          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_ARATH (Thiazole biosynthetic enzyme, chloroplastic OS=Arabidopsis thaliana GN=THI1 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.480e-42
Identity = 87/104 (83.65%), Postives = 93/104 (89.42%), Query Frame = -2
Query:  413 GLLGATGVKR*XSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 724
            G  GATGVKR  SIGMI+ VPGMKALDMN+AEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKA  LALK+LG PNA+DGT VG + PEL+L
Sbjct:  235 GPFGATGVKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLPNAIDGTLVGNLSPELVL 338          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI41_MAIZE (Thiazole biosynthetic enzyme 1-1, chloroplastic OS=Zea mays GN=THI1-1 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.550e-39
Identity = 83/104 (79.81%), Postives = 90/104 (86.54%), Query Frame = -2
Query:  413 GLLGATGVKR*XSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVGGVHPELIL 724
            G  GATGVKR   IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT    +  EL++
Sbjct:  241 GPFGATGVKRLQDIGMISAVPGMKALDMNTAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGTMSPPLREELMI 344          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI42_MAIZE (Thiazole biosynthetic enzyme 1-2, chloroplastic OS=Zea mays GN=THI1-2 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.349e-38
Identity = 81/93 (87.10%), Postives = 85/93 (91.40%), Query Frame = -2
Query:  446 GLLGATGVKR*XSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGT 724
            G  GATGVKR   IGMI  VPGMKALDMN+AED IVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK+LG+PNA+DGT
Sbjct:  238 GPFGATGVKRLQDIGMISAVPGMKALDMNAAEDEIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKALGRPNAVDGT 330          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_FUSSH (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium solani subsp. phaseoli GN=STI35 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.785e-22
Identity = 53/80 (66.25%), Postives = 66/80 (82.50%), Query Frame = -2
Query:  479 LGATGVKR*XSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 718
            +GA  VKR  S+G IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM++SG KAA  ALK
Sbjct:  234 MGAFCVKRLVSMGRIEKLGGMRGLDMNVAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMVLSGLKAAEEALK 313          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_FUSOX (Thiazole biosynthetic enzyme, mitochondrial OS=Fusarium oxysporum GN=STI35 PE=2 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.694e-21
Identity = 53/82 (64.63%), Postives = 65/82 (79.27%), Query Frame = -2
Query:  479 GLLGATGVKR*XSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 724
            G +GA  VKR  S+  IE++ GM+ LDMN AEDAIV+ TRE+VPG+IV GME++E+DGA RMGPTFGAM +SG KAA  ALK
Sbjct:  228 GPMGAFCVKRLVSMQRIEKLGGMRGLDMNLAEDAIVKGTREIVPGLIVGGMELSEVDGANRMGPTFGAMALSGLKAAEEALK 309          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_ASPOR (Thiazole biosynthetic enzyme, mitochondrial OS=Aspergillus oryzae GN=thiA PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.222e-20
Identity = 50/82 (60.98%), Postives = 63/82 (76.83%), Query Frame = -2
Query:  479 GLLGATGVKR*XSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALK 724
            G  GA   KR  S+G ++++ GM+ LDMNSAEDAIV+ TREV  G+I+ GME++EIDG  RMGPTFGAM++SG KAA  ALK
Sbjct:  235 GPFGAFCAKRLVSMGSVDKLGGMRGLDMNSAEDAIVKNTREVTKGLIIGGMELSEIDGFNRMGPTFGAMVLSGVKAAEEALK 316          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI4_UROFA (Thiazole biosynthetic enzyme, mitochondrial OS=Uromyces fabae GN=THI2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.403e-19
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = -2
Query:  437 GLLGATGVKR*XSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYVG 724
            G  GA  VKR  S G+ E +  M+ LDM  AED I   TRE++PG+IV GME++E DG+ RMGPTFGAM++SG++AA +AL+SL +    +G  VG
Sbjct:  240 GPFGAFCVKRVASAGLSEGLGDMRPLDMERAEDHIANKTREILPGLIVGGMELSEFDGSARMGPTFGAMLLSGKRAAEVALQSLDRVKIEEGEVVG 335          
BLAST of DN617813 vs. ExPASy Swiss-Prot
Match: THI2_SCHPO (Thiazole biosynthetic enzyme, mitochondrial OS=Schizosaccharomyces pombe GN=thi2 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.645e-18
Identity = 51/95 (53.68%), Postives = 62/95 (65.26%), Query Frame = -2
Query:  440 GLLGATGVKR*XSIGMIEEVPGMKALDMNSAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAAHLALKSLGQPNALDGTYV 724
            G  GA  VKR  S  ++  +  M+ LDMN AED IV+ TREV PGMIV GME++E DGA RMGPTFG MM SG KAA  AL    +  A++  Y+
Sbjct:  234 GPFGAFCVKRLASAQLVSNLHDMRPLDMNRAEDLIVKGTREVFPGMIVGGMELSEFDGANRMGPTFGGMMFSGIKAAQEALAIFDERKAVNEKYL 328          
The following BLAST results are available for this feature:
BLAST of DN617813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
THI4_CITSI2.897e-4996.15Thiazole biosynthetic enzyme, chloroplastic OS=Cit... [more]
THI4_ALNGL5.655e-4587.50Thiazole biosynthetic enzyme, chloroplastic OS=Aln... [more]
THI4_ARATH4.480e-4283.65Thiazole biosynthetic enzyme, chloroplastic OS=Ara... [more]
THI41_MAIZE3.550e-3979.81Thiazole biosynthetic enzyme 1-1, chloroplastic OS... [more]
THI42_MAIZE1.349e-3887.10Thiazole biosynthetic enzyme 1-2, chloroplastic OS... [more]
THI4_FUSSH8.785e-2266.25Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_FUSOX5.694e-2164.63Thiazole biosynthetic enzyme, mitochondrial OS=Fus... [more]
THI4_ASPOR8.222e-2060.98Thiazole biosynthetic enzyme, mitochondrial OS=Asp... [more]
THI4_UROFA1.403e-1952.08Thiazole biosynthetic enzyme, mitochondrial OS=Uro... [more]
THI2_SCHPO2.645e-1853.68Thiazole biosynthetic enzyme, mitochondrial OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01L14_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617813 ID=DN617813; Name=DN617813; organism=Citrus sinensis; type=EST; length=734bp
CTCAGATCTTCATCATTGATCTTAATCACATCAGCACTTTCCCATTGGCT
GATGCCTCAAGTTATAAACATACAAAGCAAAGAAAAGGGAACAGCCCAAG
GGCAGTCTTACACATAACACAGATAACAAGGACTAGATACGCAACTGCAA
ATTCACCTCCGAAAAACTCACAACGGTTTCTTACAAGAGGAGAAAGAAAT
TAAAATTAAAGGTTCCATGATGGACCGGAAACAAACACTTTATTCACAAA
ACCTCACAACATTATCTCATTATTCGCATCAACCATCCATCACAACCACC
TAAATACAACTACTTTTTTGCCAGAGTTTATTTGCATGCACACAGCTGAT
GAGTGATGATGCCTGTTATTACCAAATTAAGCATCAGCAGTCTCAGCAGA
ATCAGCTGCAGCTAAGATCAGCTCAGGGTGAACGCCTCCCACATATGTAC
CGTCTAATGCATTCGGCTGGCCCAGTGACTTCAACGCCAAATGCGCAGCC
TTCTGCCCCGATATCATCATTGCTCCAAATGTTGGCCCCATTCGAGGAGC
ACCATCAATCTCGGCAACTTCCATGCCGGTAACTATCATACCAGGCACAA
CCTCCCTGGTCAGCCTCACAATAGCATCTTCTGCAGAGTTCATGTCCAGT
GCCTTCATTCCAGGCACTTCCTCAATCATTCCGATACTNCTTCACCTCTT
TACTCCAGTGGCCCCCAAAAGGCCCATCATGGCC
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