DN617811

Overview
NameDN617811
Unique NameDN617811
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617811_ssr1 microsatellite DN617811_ssr1:1..10. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11510 contig Csv1_Contig11510:77..701. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617811 vs. ExPASy Swiss-Prot
Match: NCPR_CATRO (NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 3.817e-38
Identity = 89/177 (50.28%), Postives = 104/177 (58.76%), Query Frame = 2
Query:  104 KVSPFDLMSAIIRGGKXXXXXXXXXXXXXXXXXXX--LDNKEFVMILTTSIAVLIGCVVVFIXXXXXXXXXXXXXXXXXXXXXXXXXXX--DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVFFFLATYGDGEPTDNAARFYKWF 622
            K+SPF+LMSAI++G K                     L+NKE VMILTTS+AVLIGCVVV I                             D+GK+K TIFFGTQTGTAEGFAKALA+EA+ARY+KA+ KV+              K +KE + FF LATYGDGEPTDNAARFYKWF
Sbjct:    7 KLSPFELMSAILKGAKLDGSNSSDSGVAVSPAVMAMLLENKELVMILTTSVAVLIGCVVVLIWRRSSGSGKKVVEPPKLIVPKSVVEPEEIDEGKKKFTIFFGTQTGTAEGFAKALAEEAKARYEKAVIKVIDIDDYAADDEEYEEKFRKETLAFFILATYGDGEPTDNAARFYKWF 183          
BLAST of DN617811 vs. ExPASy Swiss-Prot
Match: NCPR_PHAAU (NADPH--cytochrome P450 reductase OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.032e-27
Identity = 69/135 (51.11%), Postives = 79/135 (58.52%), Query Frame = 2
Query:  227 VMILTTSIAVLIGCVVVFIXXXXXXXXXXXXXXXXXXXXXXXXXXXD--DGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVVXXXXXXXXXXXXXXKLKKENIVFFFLATYGDGEPTDNAARFYKWFT 625
            ++I TTS AV++G +V                              D   GK KVTIFFGTQTGTAEGFAKALA+E +ARY+KA  KVV              KLKKE++VFF LATYGDGEP DNAARFYKWFT
Sbjct:   28 LLIATTSAAVVVGLLVFLWKKSSDRSKEVKPVVVPRDLMMEEEEEVDVAAGKTKVTIFFGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAADDDLYEEKLKKESLVFFMLATYGDGEPIDNAARFYKWFT 162          
The following BLAST results are available for this feature:
BLAST of DN617811 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCPR_CATRO3.817e-3850.28NADPH--cytochrome P450 reductase OS=Catharanthus r... [more]
NCPR_PHAAU3.032e-2751.11NADPH--cytochrome P450 reductase OS=Phaseolus aure... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01L13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617811 ID=DN617811; Name=DN617811; organism=Citrus sinensis; type=EST; length=625bp
GAGAGAGAGAGGGGTCTTCTCTTCTCCCGTTCCATTTCCACTCGCTCTCC
GACAAATTCATACTATGCAATCATCATCGTCGTCATCAGAATCAGGCACG
ATGAAAGTATCGCCGTTCGACTTGATGTCCGCGATCATTAGAGGTGGCAA
GGTCGATCCGTCCAACGTGTCGTCGTCCGGTTCAGGAGTTGAAGTTGCTT
CGATTGTGCTCGACAATAAGGAGTTCGTTATGATCTTGACCACGTCTATT
GCCGTCCTCATCGGCTGCGTCGTCGTTTTTATTTTGCGGAGATCTAGTAG
CTCCAAGCCAAAGAAGCTTGAGCCGCTCAAGCCTTTGGTTGTTAAAGAGC
CGGAAGTTGAGGTCGATGATGGAAAGCAGAAGGTCACTATCTTCTTCGGT
ACTCAAACTGGCACAGCTGAAGGATTTGCTAAGGCTTTAGCTGACGAAGC
CAGGGCTCGATATGATAAGGCCATTTTTAAAGTCGTCGATATTGATGATT
ACGCCGACGAGGAAGATGAATATGAAGAGAAATTGAAGAAAGAGAATATA
GTATTTTTCTTCTTGGCTACATATGGAGATGGTGAGCCAACCGACAATGC
AGCTAGGTTCTATAAATGGTTTACG
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