DN617778

Overview
NameDN617778
Unique NameDN617778
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length551
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11791 contig Csv1_Contig11791:486..1036. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA5_ARATH (Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.716e-38
Identity = 73/84 (86.90%), Postives = 79/84 (94.05%), Query Frame = -3
Query:  298 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFRY 549
            FNLVL+TNVGGAGDVH+VS+KGSRT+WQ MSRNWGQNWQSNSYLNGQSLSFVVTTS+  SVVS+NVAPP WSFGQTYTG QFRY
Sbjct:  172 FNLVLVTNVGGAGDVHSVSMKGSRTKWQLMSRNWGQNWQSNSYLNGQSLSFVVTTSDRRSVVSFNVAPPTWSFGQTYTGGQFRY 255          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.151e-34
Identity = 65/83 (78.31%), Postives = 76/83 (91.57%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 549
            FNLVL+TNVGGAGDVH+V++KGSRTRWQ MSRNWGQNWQSN+ LNGQ+LSF VT S+G +VVS N+AP +WSFGQT+TGRQFR
Sbjct:  171 FNLVLVTNVGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAPASWSFGQTFTGRQFR 253          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.744e-34
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 549
            FNLVLITNVGGAGDVH+ +IKGSRT WQ MSRNWGQNWQSNSYLNGQ+LSF VTTS+G +VVS+N AP  WS+GQT+ G QFR
Sbjct:  167 FNLVLITNVGGAGDVHSAAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTFAGGQFR 249          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 6.316e-33
Identity = 65/83 (78.31%), Postives = 71/83 (85.54%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 549
            FNLVLITNVGGAGDVH+  +KGSRT WQ MSRNWGQNWQSNSYLNGQSLSF VTTS+G ++VS NVA   WSFGQT+TG Q R
Sbjct:  168 FNLVLITNVGGAGDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWSFGQTFTGAQLR 250          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.983e-32
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = -3
Query:  301 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQFR 549
            FNLVLITNV GAGDV +VSIKG+ TRWQ MSRNWGQNWQSN+ L+GQ+LSF VTTS+G +V+S N  P NWSFGQTYTG+QFR
Sbjct:  170 FNLVLITNVAGAGDVISVSIKGTNTRWQSMSRNWGQNWQSNAKLDGQALSFKVTTSDGRTVISNNATPRNWSFGQTYTGKQFR 252          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 9.120e-32
Identity = 65/83 (78.31%), Postives = 73/83 (87.95%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTR-WQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            FNLVLI+NVGGAGDVHAVSIKGS+T+ WQ MSRNWGQNWQSNSY+N QSLSF VTTS+G ++VS +VAP NW FGQTY G QF
Sbjct:  171 FNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNWGQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGGQF 253          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.008e-30
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            FNLVL+TNV GAGDV +VSIKGSRT WQPMSRNWGQNWQSN++L+GQSLSF VT S+G +V S NVA P W FGQT+ G QF
Sbjct:  165 FNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.008e-30
Identity = 61/82 (74.39%), Postives = 69/82 (84.15%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            FNLVL+TNV GAGDV +VSIKGSRT WQPMSRNWGQNWQSN++L+GQSLSF VT S+G +V S NVA P W FGQT+ G QF
Sbjct:  165 FNLVLVTNVAGAGDVRSVSIKGSRTGWQPMSRNWGQNWQSNAFLDGQSLSFQVTASDGRTVTSNNVAHPGWQFGQTFEGGQF 246          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXP21_ORYSJ (Expansin-A21 OS=Oryza sativa subsp. japonica GN=EXPA21 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.115e-29
Identity = 59/85 (69.41%), Postives = 71/85 (83.53%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIK---GSRTRWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            FNLVL++NVGGAGDVHAV++K   G + RWQ M+RNWGQNWQS + L+GQ+LSF VTT +  SVVSYNVAP  W+FGQT+TGRQF
Sbjct:  179 FNLVLVSNVGGAGDVHAVAVKAGGGRKARWQAMARNWGQNWQSGALLDGQALSFTVTTGDRRSVVSYNVAPAGWAFGQTFTGRQF 263          
BLAST of DN617778 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.902e-29
Identity = 60/83 (72.29%), Postives = 71/83 (85.54%), Query Frame = -3
Query:  304 FNLVLITNVGGAGDVHAVSIKGSRT-RWQPMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSYNVAPPNWSFGQTYTGRQF 549
            F+LVLITNVGGAGD+ AVS+KGS+T +WQ MSRNWGQNWQSN+YL GQSLSF VT S+G +VVSY+V P +W FGQT+ G QF
Sbjct:  173 FDLVLITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSYDVVPHDWQFGQTFEGGQF 255          
The following BLAST results are available for this feature:
BLAST of DN617778 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
EXPA5_ARATH1.716e-3886.90Expansin-A5 OS=Arabidopsis thaliana GN=EXPA5 PE=2 ... [more]
EXP15_ARATH1.151e-3478.31Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXP10_ARATH9.744e-3478.31Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA1_ARATH6.316e-3378.31Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP14_ARATH6.983e-3275.90Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXPA8_ARATH9.120e-3278.31Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA4_ORYSJ1.008e-3074.39Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI1.008e-3074.39Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXP21_ORYSJ1.115e-2969.41Expansin-A21 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA2_ARATH1.902e-2972.29Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01K21_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617778 ID=DN617778; Name=DN617778; organism=Citrus sinensis; type=EST; length=551bp
ATTAATTTACCTTACAAAAGCATTAAGGCAATAACAAAATGCTTTCTACT
ATAGCACTTCTCAAATACATTTTATGTATTGGAACCTGCTTTTAAGCAGA
ATTTCTATCACTTCTCTTTTATCTCCCAGCAGCAGCCACTCAAGTCAAAA
GCATGAAAAAACTGCATGCAAACACTCTCATAAATGGTACTGAAGCACAC
AAGGGCCAATTCAGAAATAATTTTGTACGTACCCATATCGCTAGAGCTAA
TTAAAAATACTTAAAGGGTTGCTTGATTTTAACTTAAATTAAGCCTAATA
TCGAAATTGTCTGCCGGTATAAGTCTGCCCAAATGACCAATTAGGAGGGG
CAACATTGTAAGAAACAACACTGTGGCCATTACTTGTGGTCACAACAAAA
GAGAGGCTTTGTCCATTAAGATACGAGTTGCTTTGCCAGTTTTGGCCCCA
GTTTCTCGACATCGGTTGCCATCTAGTCCTTGAACCTTTGATGGATACAG
CATGCACGTCACCAGCTCCTCCCACGTTTGTTATTAGAACTAAATTGAAG
T
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