DN617776

Overview
NameDN617776
Unique NameDN617776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length487
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:145..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617776 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.374e-24
Identity = 71/149 (47.65%), Postives = 86/149 (57.72%), Query Frame = 2
Query:   53 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR 487
            MAS+LALKRL+S ++ PR+ R  + P+ +S  R FNTNAVR Y                                    TRS+SQVLN MDQ  E+P  S TRG    G RRGWD KE DDAL L IDMPGL +EDV+++LEQ+TLVIR
Sbjct:    1 MASALALKRLLSSSIAPRS-RSVLRPAVSS--RLFNTNAVRSYDDDGENGDGVDLYRRSVPRRRGDFFSDVFDPFSP--TRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIR 144          
BLAST of DN617776 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.374e-24
Identity = 73/150 (48.67%), Postives = 89/150 (59.33%), Query Frame = 2
Query:   56 ASSLALKRLVSFNLI--PRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR 487
            +S+LAL+RL+S + +  PRALR  V P A S SR FNTNA R Y                                    TRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV+++LEQNTLVIR
Sbjct:    4 SSALALRRLLSSSTVAVPRALRA-VRPVAAS-SRLFNTNAARNYEDGVDRNHHSNRHVSRHGGDFFSHILDPFTP-----TRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIR 146          
BLAST of DN617776 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 9.845e-23
Identity = 66/145 (45.52%), Postives = 83/145 (57.24%), Query Frame = 2
Query:   53 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR 487
            MASSLALKR +S  L+  +    + P A+SASR FNTNA+RQY                                     RSLSQVLN +D +T++P  S      RRGWDA+ET+DAL L +DMPGLGKEDV++S+EQNTL I+
Sbjct:    1 MASSLALKRFLSSGLLSSSF---LRPVASSASRSFNTNAMRQYDQHSDDRNVDVYRHSFPRTRRDDLLLSDVFDPFSPP-RSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIK 138          
BLAST of DN617776 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 2.008e-18
Identity = 27/38 (71.05%), Postives = 36/38 (94.74%), Query Frame = 2
Query:  374 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR 487
            RGWDA+ET+DAL+L +DMPGL KEDV++S+EQNTL+I+
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIK 149          

HSP 2 Score: 39.6614 bits (91), Expect = 2.008e-18
Identity = 21/43 (48.84%), Postives = 32/43 (74.42%), Query Frame = 2
Query:   53 MASSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQY 181
            MASSL  KR +S +L+ R+L   + P+A+++ R F+TNA+RQY
Sbjct:    1 MASSLIAKRFLSSSLLSRSL---LRPAASASHRSFDTNAMRQY 40          

HSP 3 Score: 25.7942 bits (55), Expect = 2.008e-18
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = 1
Query:  268 CV*SIFTNKEPEPGPELHGSDDGE 339
            CV SIF++ E EPG E  G   G+
Sbjct:   72 CVGSIFSDSEFEPGSEHDGPGHGQ 95          
BLAST of DN617776 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 3.277e-18
Identity = 54/146 (36.99%), Postives = 76/146 (52.05%), Query Frame = 2
Query:   59 SSLALKRLVSFNLIPRALRCTVAPSATSASRFFNTNAVRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRSLSQVLNFMDQMTESPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR 487
            +S+AL+RL S NL+   +   +     S SR FNTNA                                        TRS+ Q++N MDQ+ E+PF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+VS+E NTL+I+
Sbjct:    2 ASMALRRLASRNLVSGGIFRPL-----SVSRSFNTNAQMGRVDHDHELDDRSNRAPISRRGDFPASFFSDVFDPFRATRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIK 142          
BLAST of DN617776 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.275e-11
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = 2
Query:   53 MASSLALKRLVSFNLIPRALRCTVAPSATSA---------SRFFNTNA-VRQYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT--RSLSQVLNFMDQMTESPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIR 487
            MAS +A KR+  F L+ + L  + A  A SA         SR +NT A +R++                                    +  +SL ++L+ MD +  +P        LRRGW+AKE+++AL+L +DMPGLGKE V+V  EQN+LVI+
Sbjct:    1 MASIVASKRIPLFRLVEQLLAASPAQGAASALRPVAVAGGSRAYNTGAQLRRHERDESDDDSGRGYDTRRPTRDATMPAFFSDVFRDPFSAPQSLGRLLSLMDDLA-TPAGRAGAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIK 156          
The following BLAST results are available for this feature:
BLAST of DN617776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
HS23M_ARATH1.374e-2447.6523.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS235_ARATH1.374e-2448.6723.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_PEA9.845e-2345.52Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS22M_SOYBN2.008e-1871.05Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS23C_CHERU3.277e-1836.99Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS24M_ORYSJ2.275e-1133.1224.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01K20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617776 ID=DN617776; Name=DN617776; organism=Citrus sinensis; type=EST; length=487bp
GTATTTGTGAAATCTCTGCATTGTTTTGTGCTTTCTTTAAGAATTCGGCT
CAATGGCGTCCTCTCTTGCTCTCAAGAGGCTTGTTTCTTTTAATCTCATC
CCCAGGGCTTTACGCTGCACCGTCGCTCCTTCTGCTACTTCGGCATCTCG
GTTCTTCAACACAAACGCTGTTCGTCAATACGATGACGGCGGAGACGACC
GTGATCTCGACATTGATCGCCGTTCCGCTCGCTCTTTCCCTCGCCGTCGT
GACGACTTCTTCTCAGATGTGTTTGATCCATTTTCACCAACAAGGAGCCT
GAGCCAGGTCCTGAACTTCATGGATCAGATGACGGAGAGCCCTTTCTTCA
GTGGCACGCGTGGTGGACTGCGCCGAGGCTGGGATGCTAAAGAAACCGAT
GACGCATTGAACCTCAGCATCGACATGCCAGGGCTGGGCAAGGAAGACGT
GAGAGTCTCTCTGGAGCAGAACACTCTGGTGATCAGA
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