DN617756

Overview
NameDN617756
Unique NameDN617756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5452 contig Csv1_Contig5452:33..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617756 vs. ExPASy Swiss-Prot
Match: NHX6_ARATH (Sodium/hydrogen exchanger 6 OS=Arabidopsis thaliana GN=NHX6 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 7.375e-39
Identity = 88/143 (61.54%), Postives = 100/143 (69.93%), Query Frame = -2
Query:  402 LVNLARPAHRQIL*KHQQALWYSGLRGAMAFALALQSVHDLPEGHGQXXXXXXXXXXXXXXXXXXXXXXTMLEALQVVGDAHDGHLGENFE-GNNGYAAPYDEGST-SGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHNG 824
            LVNLARPAHR+I   HQ+ALWYSGLRGAMAFALALQSVHDLPEGHGQ                      TMLEAL+VVGD+HD  LG+ FE  N+ Y   YD+  T  G+  + KL+EF KSAASFT LD+NYLTPFFTS+NG
Sbjct:  365 LVNLARPAHRKIPMTHQKALWYSGLRGAMAFALALQSVHDLPEGHGQTIFTATTAIVVLTVLLIGGSTGTMLEALEVVGDSHDTSLGDGFEVVNSRYMTSYDDEDTPPGSGFRTKLREFHKSAASFTELDRNYLTPFFTSNNG 507          
BLAST of DN617756 vs. ExPASy Swiss-Prot
Match: NHX5_ARATH (Sodium/hydrogen exchanger 5 OS=Arabidopsis thaliana GN=NHX5 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.347e-32
Identity = 77/150 (51.33%), Postives = 96/150 (64.00%), Query Frame = -2
Query:  402 LVNLARPAHRQIL*KHQQALWYSGLRGAMAFALALQSVHDLPEGHGQXXXXXXXXXXXXXXXXXXXXXXTMLEALQVVGDAHDGHLGENFEGNNGYAAP---------YDEGSTSGNKLKMKLKEFRKSAASFTALDKNYLTPFFTSHNG 824
            LVNL R  +++I  KHQ+ALWYSGLRGAMAFALALQS+HDLPEGHGQ                       MLEAL+VVGD  D  + E FE ++    P          ++ S+SG++ KMKLKEF K+  SFTALDKN+LTPFFT+++G
Sbjct:  361 LVNLFRQENQKIPMKHQKALWYSGLRGAMAFALALQSLHDLPEGHGQIIFTATTTIVVVTVLLIGGSTGKMLEALEVVGDDLDDSMSEGFEESDHQYVPPPFSIGASSDEDTSSSGSRFKMKLKEFHKTTTSFTALDKNFLTPFFTTNSG 510          
The following BLAST results are available for this feature:
BLAST of DN617756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NHX6_ARATH7.375e-3961.54Sodium/hydrogen exchanger 6 OS=Arabidopsis thalian... [more]
NHX5_ARATH1.347e-3251.33Sodium/hydrogen exchanger 5 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01K09_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617756 ID=DN617756; Name=DN617756; organism=Citrus sinensis; type=EST; length=825bp
TTTTTTTTTTTTTTGATCGAGGGCAGGACTTAAGAATATATTTGCTAAAT
CAGGTGTACAGACAAACAGACATCAGTAAGGTAGGACAAGTAACTGCCTG
ATCGCTAATTGTGATTCATCAGTGCCTAATATAAAAAAATCTCCTTTGTA
TGACACTTGTATAACTGTATCTTGGCATCTACGAGAGACCGTTGAAGTTG
TAATATAATATGTGCATAACTCTATTTCACCTATCCATCCCTTTCAGCTT
GCGAGCATTACAATCATCTCTAAGCAATTATCTACAAATCTGACTTCATC
CTGTTTCCTACTTGTTTCTGGTATAACTGTTAATTGGGGCCATGGAAACT
CAATCTTCTGGAGCTGGGCAGTAGGTCCTCATCCTCTTCATCTTCTTCAT
CCCCATTGTGACTTGTAAAGAATGGGGTAAGATAATTCTTATCTAATGCT
GTAAACGATGCAGCACTCTTGCGGAATTCTTTCAGTTTCATCTTCAACTT
ATTCCCTGATGTTGAGCCCTCATCATAAGGAGCAGCATAGCCATTGTTAC
CCTCGAAATTTTCGCCTAGGTGGCCATCATGAGCATCACCAACAACTTGT
AAAGCTTCCAGCATGGTACCAGTTGAACCACCAATCAATAAAACTGTCAA
AACAACTATGGCAGTAGTTGCAGTGAATATGGTCTGGCCATGTCCTTCAG
GGAGATCATGAACTGATTGCAACGCAAGAGCAAAAGCCATAGCACCACGA
AGTCCACTGTACCAAAGTGCTTGTTGATGTTTTTAAAGGATCTGTCGATG
TGCAGGTCGAGCCAAATTAACCAAA
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