DN617749

Overview
NameDN617749
Unique NameDN617749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length593
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617749_ssr22 microsatellite DN617749_ssr22:22..39. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig12405 contig Csv1_Contig12405:604..1196. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617749 vs. ExPASy Swiss-Prot
Match: ACOX3_ARATH (Acyl-coenzyme A oxidase 3, peroxisomal OS=Arabidopsis thaliana GN=ACX3 PE=1 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 4.781e-48
Identity = 88/141 (62.41%), Postives = 117/141 (82.98%), Query Frame = -2 
Query:  170 RDLLSRFVMKVSQHQAEGQSKDYALMLSYQLAEDLGRAFSDRAMLQTFIDTEATISSGSLKNVLGLLRSLYALTCLEEDAAFLRYGYLSTDNASAVRNEVQKLCSEIRPHALALVSSFGIPDAFLGPIAFDWIDANTWSSV 592
            RDLL +F  +V+Q Q  G+S++++ +LS+QLAEDLG+AF+++A+LQT +D EA + +GS+K+VLGL+RS+YAL  LEED + LRYGYLS DN   VR EV KLC E+RPHALALV+SFGIPD+FL PIAF+W++AN WSSV
Sbjct:  535 RDLLEQFTSEVAQLQGRGESREFSFLLSHQLAEDLGKAFTEKAILQTILDAEAKLPTGSVKDVLGLVRSMYALISLEEDPSLLRYGYLSQDNVGDVRREVSKLCGELRPHALALVTSFGIPDSFLSPIAFNWVEANAWSSV 675
[Close]
BLAST of DN617749 vs. ExPASy Swiss-Prot
Match: ACO32_ARATH (Putative acyl-coenzyme A oxidase 3.2, peroxisomal OS=Arabidopsis thaliana GN=ACX3.2 PE=3 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.302e-45
Identity = 84/141 (59.57%), Postives = 114/141 (80.85%), Query Frame = -2 
Query:  170 RDLLSRFVMKVSQHQAEGQSKDYALMLSYQLAEDLGRAFSDRAMLQTFIDTEATISSGSLKNVLGLLRSLYALTCLEEDAAFLRYGYLSTDNASAVRNEVQKLCSEIRPHALALVSSFGIPDAFLGPIAFDWIDANTWSSV 592
            RDLL RF  +V++ Q  G+S+++  +L++QL+EDL +AF+++A+LQT +D EA +  GS+K+VLGL+RS+YAL  LEED + LRYG+LS DN   VR EV KLC E+RPHALALV+SFGIPDAFL PIAF+W++AN WSS+
Sbjct:  535 RDLLERFTSEVAELQGRGESREFLFLLNHQLSEDLSKAFTEKAILQTVLDAEAKLPPGSVKDVLGLVRSMYALISLEEDPSLLRYGHLSRDNVGDVRKEVSKLCGELRPHALALVASFGIPDAFLSPIAFNWVEANAWSSL 675
The following BLAST results are available for this feature:
BLAST of DN617749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ACOX3_ARATH4.781e-4862.41Acyl-coenzyme A oxidase 3, peroxisomal OS=Arabidop... [more]
ACO32_ARATH1.302e-4559.57Putative acyl-coenzyme A oxidase 3.2, peroxisomal ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01K06_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617749 ID=DN617749; Name=DN617749; organism=Citrus sinensis; type=EST; length=593bp
TTTTTTTAATAGTAGTAATAGTAATAATAATAATAATAATGAACGGTTTG
ACAGAAAGTGTTCGGTAAGAGTTATCTATGCTGCTCTTATTGACGGAAGC
AGAGAGCTTTGATCACTAAATCTTTTGCTTAATAGAAGTACGAGATACAG
TATGGCACCTACACTACTGAACTGAGGACCAAGTATTTGCATCAATCCAG
TCGAATGCTATAGGGCCCAAGAAAGCATCGGGAATGCCGAAGGAACTGAC
CAAGGCAAGTGCATGTGGTCGAATTTCGCTGCAGAGCTTTTGCACTTCGT
TCCTCACAGCAGAAGCATTGTCTGTTGATAAATAACCATATCGTAGGAAT
GCAGCATCTTCTTCCAAACAGGTCAGAGCATACAAAGATCTCAACAGACC
TAGGACATTCTTTAAAGAACCGCTAGATATAGTTGCCTCAGTATCAATAA
AGGTTTGCAACATTGCTCGATCTGAGAATGCTCTTCCCAAGTCTTCAGCG
AGCTGATAACTCAGCATGAGGGCGTAATCTTTACTTTGTCCCTCTGCTTG
ATGTTGGGACACTTTCATAACAAAGCGACTCAAGAGATCTCTC
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