DN617741

Overview
NameDN617741
Unique NameDN617741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12156 contig Csv1_Contig12156:726..1344. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617741 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.093e-21
Identity = 73/183 (39.89%), Postives = 98/183 (53.55%), Query Frame = 1
Query:   25 YLNNSDQDYYNNVSILEEKPQV--NQYGYLGSFPNDGELGFKPFVPTADDTPLYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAF-DNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFPSTLGG 564
            Y NNS  + + ++S +EEKPQ+  NQ+G   SF   G  G++           YF+SDQGSNSFDCS+FGW +  PKTPEISS+L      +E+ FV+   N  KKLK NS+             SD+L+A+ DN +   P+       EA L A   G  TQ+  N + LWS D+    L G
Sbjct:  228 YCNNSFDNSFGDMSFMEEKPQMYNNQFGLTNSFDAGGNNGYQ-----------YFSSDQGSNSFDCSEFGWSDHGPKTPEISSMLVNN---NEASFVEE-TNAAKKLKPNSDE------------SDDLMAYLDNALWDTPLEV-----EAMLGADA-GAVTQEEENPVELWSLDEINFMLEG 377          
BLAST of DN617741 vs. ExPASy Swiss-Prot
Match: RA212_ARATH (Ethylene-responsive transcription factor RAP2-12 OS=Arabidopsis thaliana GN=RAP2-12 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 4.590e-20
Identity = 73/193 (37.82%), Postives = 96/193 (49.74%), Query Frame = 1
Query:    1 PSLNQNFDYLNNSDQDYYNNVSILEEKPQVNQYGYLGSFPNDGELGFKPFVPTADDTPLYFNSDQGSNSFDCSDFGWGEQAPKTPEISSVLEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGD--NTQDGG-NLMNLWSFDDFPSTLGGVY 570
            P+ N +   + NS+  +  N+  +EEK QV+         N+ + G    V    +   YF+SDQGSNSFDCS+FGW +QAP TP+ISS   A    + S      ANP KKLKS                    + F+        PY    W+ASLD FLN D   TQD G N M+LWS D+  S +GGV+
Sbjct:  205 PNPNPSPALVQNSNISF-ENMCFMEEKHQVSNN-------NNNQFGMTNSVDAGCNGYQYFSSDQGSNSFDCSEFGWSDQAPITPDISS---AVINNNNSALFFEEANPAKKLKS--------------------MDFET-------PYNNTEWDASLD-FLNEDAVTTQDNGANPMDLWSIDEIHSMIGGVF 358          
BLAST of DN617741 vs. ExPASy Swiss-Prot
Match: ERF1_ORYSJ (Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.633e-17
Identity = 67/189 (35.45%), Postives = 97/189 (51.32%), Query Frame = 1
Query:    1 PSLNQNFDYLNNSDQDYYNNVSILEEKPQVNQYGYLGSFPNDGELGFKPFVPTADDT-PL---YFNSDQGSNSFDCSDFGWGEQAPKTPEISSV--LEATPEVDESQFVDAVANPMKKLKSNSENAVPVQDNNGKSLSDELLAFDNQVKFLPMPYPEGSWEASLDAFLNGDNTQDGGNLMNLWSFDDFP 549
            P++   F+ L N++   Y + +    KP V         P++      PFVP  +   P+     NSDQGSNSF CSDFGW E   KTP+I+S+  +    EVDES F+ +  NPM           PV +N+   L D     +  ++FL     +G+ + S+D+ LN D +QD  + M+LWSFDD P
Sbjct:  203 PTVKPAFNNLANANAFVYPSANFTSNKPFVQ--------PDN-----MPFVPAMNSAAPIEDPIINSDQGSNSFGCSDFGW-ENDTKTPDITSIAPISTIAEVDESAFIKSSTNPM---------VPPVMENSAVDLPD----LEPYMRFL---LDDGAGD-SIDSLLNLDGSQDVVSNMDLWSFDDMP 360          
The following BLAST results are available for this feature:
BLAST of DN617741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RAP22_ARATH1.093e-2139.89Ethylene-responsive transcription factor RAP2-2 OS... [more]
RA212_ARATH4.590e-2037.82Ethylene-responsive transcription factor RAP2-12 O... [more]
ERF1_ORYSJ1.633e-1735.45Ethylene-responsive transcription factor 1 OS=Oryz... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01K01_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001K01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617741 ID=DN617741; Name=DN617741; organism=Citrus sinensis; type=EST; length=619bp
CCAAGTTTGAACCAGAACTTCGATTACTTGAACAACTCCGATCAGGATTA
CTACAACAATGTGAGTATTCTGGAGGAGAAACCACAAGTGAATCAGTATG
GATATTTGGGCTCCTTCCCTAATGATGGAGAACTAGGATTCAAACCCTTT
GTGCCAACAGCTGATGATACTCCTTTGTACTTCAACTCTGACCAAGGCAG
TAACTCCTTTGATTGTTCTGACTTTGGCTGGGGAGAACAGGCACCAAAGA
CTCCTGAAATCTCATCTGTTTTGGAAGCTACCCCTGAAGTTGATGAATCT
CAGTTTGTGGATGCGGTTGCAAACCCGATGAAGAAGCTGAAATCTAACTC
TGAGAATGCTGTGCCTGTTCAGGATAACAATGGAAAGTCTCTGTCTGATG
AGCTTTTGGCTTTTGACAATCAGGTGAAGTTCTTGCCAATGCCGTATCCT
GAAGGAAGCTGGGAGGCCTCCCTCGATGCCTTCCTCAATGGTGACAACAC
TCAGGATGGTGGAAACTTGATGAACCTTTGGAGCTTTGATGACTTCCCTT
CTACCCTAGGGGGAGTGTATTGAGCAAACTTTAATGTGCTTGCTAGTTTT
GTAAATAAGGCTATATCTT
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