DN617731

Overview
NameDN617731
Unique NameDN617731
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length726
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617731_ssr167 microsatellite DN617731_ssr167:167..181. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5746 contig Csv1_Contig5746:1..726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGA17_ARATH (Beta-galactosidase 17 OS=Arabidopsis thaliana GN=BGAL17 PE=2 SV=1)

HSP 1 Score: 278.87 bits (712), Expect = 1.947e-74
Identity = 136/212 (64.15%), Postives = 159/212 (75.00%), Query Frame = 3
Query:   90 TVLISLLAFLG-FVPVFAPLPSLAFXXXXXXXXXXXXXXXVNGRKFEIEDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYL 722
            ++L+ +L  +G +VPVFA LPSL++               ++ RKF I+DD F KDG  FQIIGGDLHYFR+LP++WEDRLLRA ALGLNTIQ YVPWNLHEPKPGK+VF GI DLVSFLKLC+KLD LVMLR GPYIC EWDLGGF             R+SD  YL+LVERWW VLLPK+ PLLY  GGP++MVQIENE+GSYG+DK YL
Sbjct:   19 SMLLLVLVVVGIYVPVFALLPSLSYTPQSLPSAIPQDEKMIS-RKFYIKDDNFWKDGNRFQIIGGDLHYFRVLPEYWEDRLLRANALGLNTIQVYVPWNLHEPKPGKMVFEGIGDLVSFLKLCEKLDFLVMLRAGPYICGEWDLGGFPAWLLAVKPRLQLRTSDPVYLKLVERWWDVLLPKVFPLLYSNGGPVIMVQIENEYGSYGNDKAYL 229          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGAL8_ORYSJ (Beta-galactosidase 8 OS=Oryza sativa subsp. japonica GN=Os05g0539400 PE=2 SV=1)

HSP 1 Score: 257.299 bits (656), Expect = 6.065e-68
Identity = 118/170 (69.41%), Postives = 135/170 (79.41%), Query Frame = 3
Query:  216 RKFEIEDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGDDKEYLH 725
            R+F +E+D F KDG PFQI+GGD+HYFRI+P++W+DRLLRAKALGLNTIQTYVPWNLHEPKP    F G  D+ S+L+L  +LD+LVMLR GPYIC EWDLGGF             RSSD  YL LV+RWWGVLLPKIAPLLY  GGPI+MVQIENEFGS+GDDK YLH
Sbjct:   32 RRFWVENDTFWKDGAPFQIVGGDVHYFRIVPEYWKDRLLRAKALGLNTIQTYVPWNLHEPKPLSWEFKGFTDIESYLRLAHELDMLVMLRVGPYICGEWDLGGFPPWLLTIEPTIELRSSDSTYLSLVDRWWGVLLPKIAPLLYSNGGPIIMVQIENEFGSFGDDKNYLH 201          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGAL_MOUSE (Beta-galactosidase OS=Mus musculus GN=Glb1 PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.130e-48
Identity = 102/202 (50.50%), Postives = 126/202 (62.38%), Query Frame = 3
Query:  126 VPVFAPLPSLAFXXXXXXXXXXXXXXXVNGRKFEIE--DDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-GDDKEYL 722
            VP+  PLP LA                V  R F+++   D F KDG+PF+ I G +HYFRI   +WEDRLL+ K  GLN IQ YVPWN HEP+PG+  FSG  D+  F++L  +L LLV+LRPGPYICAEWD+GG              RSSD  YL  V++W  VLLPK+ PLLY  GGPI+ VQ+ENE+GSY   D +YL
Sbjct:    4 VPLCTPLPLLALLQLLGAAHGIYN---VTQRTFKLDYSRDRFLKDGQPFRYISGSIHYFRIPRFYWEDRLLKMKMAGLNAIQMYVPWNFHEPQPGQYEFSGDRDVEHFIQLAHELGLLVILRPGPYICAEWDMGGL-PAWLLEKQSIVLRSSDPDYLVAVDKWLAVLLPKMKPLLYQNGGPIITVQVENEYGSYFACDYDYL 201          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGAL_FELCA (Beta-galactosidase OS=Felis catus GN=GLB1 PE=2 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.087e-48
Identity = 94/169 (55.62%), Postives = 116/169 (68.64%), Query Frame = 3
Query:  219 KFEIEDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD-DKEYL 722
            K +   + F KDG+PF+ I G +HYFR+   +W+DRLL+ K  GLN IQTYVPWN HEP+PG+  FSG  D+  FLKL  +L LLV+LRPGPYICAEWD+GG              RSSD  YL  V++W GVLLPK+ PLLY  GGPI+ VQ+ENE+GSY   D +YL
Sbjct:   34 KIDYGHNRFLKDGQPFRYISGSIHYFRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPQPGQYQFSGEHDVEYFLKLAHELGLLVILRPGPYICAEWDMGGL-PAWLLLKESIILRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYFTCDYDYL 201          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGAL_CANFA (Beta-galactosidase OS=Canis familiaris GN=GLB1 PE=2 SV=3)

HSP 1 Score: 186.037 bits (471), Expect = 1.717e-46
Identity = 93/172 (54.07%), Postives = 117/172 (68.02%), Query Frame = 3
Query:  216 RKFEIE--DDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSYGD-DKEYL 722
            R F I+   + F KDG+PF+ I G +HY R+   +W+DRLL+ K  GLN IQTYVPWN HEP+PG+  FSG  D+  F+KL  +L LLV+LRPGPYICAEWD+GG              RSSD  YL  V++W GVLLPK+ PLLY  GGPI+ +Q+ENE+GSY   D +YL
Sbjct:   31 RTFTIDYSHNRFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPQPGQYQFSGEQDVEYFIKLAHELGLLVILRPGPYICAEWDMGGL-PAWLLLKESIILRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITMQVENEYGSYFTCDYDYL 201          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGAL_MACFA (Beta-galactosidase OS=Macaca fascicularis GN=GLB1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.243e-46
Identity = 95/172 (55.23%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  216 RKFEI--EDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-GDDKEYL 722
            R FEI    D F KDG+PF+ I G +HY R+   +W+DRLL+ K  GLNTIQTYVPWN HEP PG+  FS   D+  FL+L  +L LLV+LRPGPYICAEW++GG              RSSD  YL  V++W GVLLPK+ PLLY  GGPI+ VQ+ENE+GSY   D +YL
Sbjct:   30 RVFEIAYSQDRFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNTIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGL-PAWLLEKEAILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPIITVQVENEYGSYFACDFDYL 200          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGAL_HUMAN (Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 8.523e-46
Identity = 93/172 (54.07%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  216 RKFEIE--DDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-GDDKEYL 722
            R FEI+   D F KDG+PF+ I G +HY R+   +W+DRLL+ K  GLN IQTYVPWN HEP PG+  FS   D+  FL+L  +L LLV+LRPGPYICAEW++GG              RSSD  YL  V++W GVLLPK+ PLLY  GGP++ VQ+ENE+GSY   D +YL
Sbjct:   30 RMFEIDYSRDSFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLRLAHELGLLVILRPGPYICAEWEMGGL-PAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYL 200          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGAL_PONAB (Beta-galactosidase OS=Pongo abelii GN=GLB1 PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.113e-45
Identity = 93/172 (54.07%), Postives = 116/172 (67.44%), Query Frame = 3
Query:  216 RKFEIE--DDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-GDDKEYL 722
            R FEI+   D F KDG+PF+ I G +HY R+   +W+DRLL+ K  GLN IQTYVPWN HEP PG+  FS   D+  FL+L  +L LLV+LRPGPYICAEW++GG              RSSD  YL  V++W GVLLPK+ PLLY  GGP++ VQ+ENE+GSY   D +YL
Sbjct:   30 RMFEIDYSRDCFLKDGQPFRYISGSIHYSRVPRFYWKDRLLKMKMAGLNAIQTYVPWNFHEPWPGQYQFSEDHDVEYFLQLAHELGLLVILRPGPYICAEWEMGGL-PAWLLEKESILLRSSDPDYLAAVDKWLGVLLPKMKPLLYQNGGPVITVQVENEYGSYFACDFDYL 200          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: BGAL_BOVIN (Beta-galactosidase OS=Bos taurus GN=GLB1 PE=2 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.899e-45
Identity = 92/172 (53.49%), Postives = 117/172 (68.02%), Query Frame = 3
Query:  216 RKFEIE--DDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY-GDDKEYL 722
            R F+I+   + F KDG+PF+ I G +HYFR+   +W+DRLL+ K  GLN IQTYV WN HE +PG+  FSG  D+  F++L  +L LLV+LRPGPYICAEWD+GG              RSSD  YL  V++W GVLLPK+ PLLY  GGPI+ VQ+ENE+GSY   D +YL
Sbjct:   29 RTFQIDYRRNRFLKDGQPFRYISGSIHYFRVPRFYWKDRLLKMKMAGLNAIQTYVAWNFHELQPGRYNFSGDHDVEHFIQLAHELGLLVILRPGPYICAEWDMGGL-PAWLLEKKSIVLRSSDPDYLAAVDKWLGVLLPKMRPLLYKNGGPIITVQVENEYGSYLSCDYDYL 199          
BLAST of DN617731 vs. ExPASy Swiss-Prot
Match: GLB1L_MOUSE (Beta-galactosidase-1-like protein OS=Mus musculus GN=Glb1l PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.170e-43
Identity = 82/157 (52.23%), Postives = 106/157 (67.52%), Query Frame = 3
Query:  231 EDDMFRKDGEPFQIIGGDLHYFRILPQHWEDRLLRAKALGLNTIQTYVPWNLHEPKPGKLVFSGIADLVSFLKLCQKLDLLVMLRPGPYICAEWDLGGFXXXXXXXXXXXXXRSSDRAYLQLVERWWGVLLPKIAPLLYDIGGPIVMVQIENEFGSY 701
            E D F  DG PF+ + G LHYFR+ P  W DRLL+ +  GLN +Q YVPWN HEP+PG   F+G  DL++FL    K++LLV+LRPGPYICAEW++GG              R+SD A+L+ V+ W+ VLLPKI P LY  GG I+ +Q+ENE+GSY
Sbjct:   31 EHDRFLLDGVPFRYVSGSLHYFRVPPVLWADRLLKMQLSGLNAVQFYVPWNYHEPEPGIYNFNGSRDLIAFLNEAAKVNLLVILRPGPYICAEWEMGGL-PSWLLRNPNIHLRTSDPAFLEAVDSWFKVLLPKIYPFLYHNGGNIISIQVENEYGSY 186          
The following BLAST results are available for this feature:
BLAST of DN617731 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
BGA17_ARATH1.947e-7464.15Beta-galactosidase 17 OS=Arabidopsis thaliana GN=B... [more]
BGAL8_ORYSJ6.065e-6869.41Beta-galactosidase 8 OS=Oryza sativa subsp. japoni... [more]
BGAL_MOUSE3.130e-4850.50Beta-galactosidase OS=Mus musculus GN=Glb1 PE=2 SV... [more]
BGAL_FELCA4.087e-4855.62Beta-galactosidase OS=Felis catus GN=GLB1 PE=2 SV=... [more]
BGAL_CANFA1.717e-4654.07Beta-galactosidase OS=Canis familiaris GN=GLB1 PE=... [more]
BGAL_MACFA2.243e-4655.23Beta-galactosidase OS=Macaca fascicularis GN=GLB1 ... [more]
BGAL_HUMAN8.523e-4654.07Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV... [more]
BGAL_PONAB1.113e-4554.07Beta-galactosidase OS=Pongo abelii GN=GLB1 PE=2 SV... [more]
BGAL_BOVIN1.899e-4553.49Beta-galactosidase OS=Bos taurus GN=GLB1 PE=2 SV=1[more]
GLB1L_MOUSE5.170e-4352.23Beta-galactosidase-1-like protein OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J20_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617731 ID=DN617731; Name=DN617731; organism=Citrus sinensis; type=EST; length=726bp
GAGAGTCAACGACGACGATGACAGTCAAACGCGCGATGGCGACAATGCGA
AGGCGGAGCACCGCCACCACCAATACGACGTTGTTCCTCACCGTTTTGAT
ATCGCTCTTGGCCTTTCTTGGCTTCGTCCCTGTCTTCGCTCCCCTCCCTT
CTCTCGCCTTCCGCAATCCTCCTCCTCCTCCTCACCACCGTCATCGCCAC
AATAACGTGAATGGTCGAAAGTTTGAGATTGAGGATGACATGTTCCGGAA
AGATGGTGAGCCATTTCAGATTATTGGTGGTGACCTGCATTATTTCCGCA
TTCTCCCTCAGCACTGGGAAGATAGGCTTTTGCGAGCAAAGGCTTTAGGC
TTGAATACCATTCAAACTTATGTTCCTTGGAATCTGCATGAACCAAAACC
TGGCAAGCTGGTTTTTAGTGGCATTGCAGATCTTGTTTCATTTCTTAAAC
TTTGTCAGAAGCTGGATTTGCTTGTTATGCTTCGACCTGGGCCTTATATA
TGTGCAGAGTGGGATTTGGGGGGTTTCCCTGCTTGGTTACTTGCCAAAAA
GCCGGCTCTCAAGCTAAGGTCATCTGATCGTGCTTACCTTCAGTTGGTTG
AAAGATGGTGGGGAGTCCTACTTCCGAAAATAGCTCCTCTGCTTTATGAC
ATTGGAGGCCCAATTGTAATGGTTCAGATTGAAAATGAATTTGGTTCGTA
TGGAGATGACAAAGAGTATCTTCATC
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