DN617730

Overview
NameDN617730
Unique NameDN617730
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length602
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617730 vs. ExPASy Swiss-Prot
Match: BGA17_ARATH (Beta-galactosidase 17 OS=Arabidopsis thaliana GN=BGAL17 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.678e-35
Identity = 65/101 (64.36%), Postives = 82/101 (81.19%), Query Frame = -1
Query:  285 KEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILHHGENLVVIFELESPNSELVIHSVNQPDFTCGSIKSNVLQL 587
            KEPA + G FSI+   ++KDTYLSF+GWGKG+AFVNEFN+GR+WPS GPQC+LYVPAP+L  G+N +V+FELESP+ EL + +V+  DFTCGS  S V QL
Sbjct:  597 KEPALFAGEFSINSEEEIKDTYLSFNGWGKGVAFVNEFNIGRYWPSVGPQCNLYVPAPLLKRGKNTLVVFELESPHLELSLEAVDHQDFTCGSNVSKVNQL 697          
BLAST of DN617730 vs. ExPASy Swiss-Prot
Match: BGAL8_ORYSJ (Beta-galactosidase 8 OS=Oryza sativa subsp. japonica GN=Os05g0539400 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.018e-33
Identity = 62/94 (65.96%), Postives = 74/94 (78.72%), Query Frame = -1
Query:  312 ITKEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILHHGENLVVIFELESPNSELVIHSVNQPDFTCG 593
            I++EPAFY G F ID  ++ KDT++SF GW KG+AFVN FN+GRFWP+ GPQC LYVPAPIL  G+N++VIFEL SPN EL I  V  PDFTCG
Sbjct:  579 ISEEPAFYEGHFHIDSESEKKDTFISFRGWNKGVAFVNNFNIGRFWPAIGPQCALYVPAPILKPGDNVIVIFELHSPNPELTIKLVKDPDFTCG 672          
BLAST of DN617730 vs. ExPASy Swiss-Prot
Match: BGAL1_DICDI (Beta-galactosidase 1 OS=Dictyostelium discoideum GN=glb1 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.230e-14
Identity = 36/91 (39.56%), Postives = 56/91 (61.54%), Query Frame = -1
Query:  321 ITKEPAFYVGRFSIDKVNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPILHHGENLVVIFELESPNSELVIHSVNQPDF 593
            ++  P FY    S++  N + DT+LSF+G GKG  FVN +N+GR+W + GPQ  +Y+ + +LH G+N +++FE         I  +NQP F
Sbjct:  581 LSNTPTFYQATLSLNSTNDIGDTFLSFTGLGKGQLFVNGYNVGRYW-NVGPQRTIYISSVLLHQGDNEIILFETLLTQPIFEIQFLNQPYF 670          
BLAST of DN617730 vs. ExPASy Swiss-Prot
Match: BGAL_FELCA (Beta-galactosidase OS=Felis catus GN=GLB1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.504e-12
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  369 PAFYVGRFSIDK--VNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPIL-HHGENLVVIFELE 581
            PAFY G FSI     +  +DT++ FSGW KG  ++N FNLGR+WP  GPQ  L+VP  IL     N +++ ELE
Sbjct:  551 PAFYAGNFSIPSGIPDLPQDTFIQFSGWTKGQVWINGFNLGRYWPGRGPQVTLFVPRHILVTSAPNTIMVLELE 624          
BLAST of DN617730 vs. ExPASy Swiss-Prot
Match: BGAL_MACFA (Beta-galactosidase OS=Macaca fascicularis GN=GLB1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.964e-12
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  369 PAFYVGRFSIDK--VNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPIL-HHGENLVVIFELE 581
            PAFYVG FSI     +  +DT++ F GW KG  ++N FNLGR+WP+ GPQ  L+VP  IL     N + + ELE
Sbjct:  549 PAFYVGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITVLELE 622          
BLAST of DN617730 vs. ExPASy Swiss-Prot
Match: BGAL_MOUSE (Beta-galactosidase OS=Mus musculus GN=Glb1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.565e-12
Identity = 38/80 (47.50%), Postives = 50/80 (62.50%), Query Frame = -1
Query:  354 PAFYVGRFSIDK--VNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPIL-HHGENLVVIFELE-SPNSE 581
            P FYVG FSI     +  +DT++ F GW KG  ++N FNLGR+WP+ GPQ  L+VP  IL     N + + ELE +P SE
Sbjct:  551 PTFYVGNFSIPSGIPDLPQDTFIQFPGWSKGQVWINGFNLGRYWPTMGPQKTLFVPRNILTTSAPNNITVLELEFAPCSE 630          
BLAST of DN617730 vs. ExPASy Swiss-Prot
Match: BGAL_PONAB (Beta-galactosidase OS=Pongo abelii GN=GLB1 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.349e-12
Identity = 36/74 (48.65%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  369 PAFYVGRFSIDK--VNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPIL-HHGENLVVIFELE 581
            PAFYVG FSI     +  +DT++ F GW KG  ++N FNLGR+WP+ GPQ  L+VP  IL     N + + ELE
Sbjct:  549 PAFYVGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITMLELE 622          
BLAST of DN617730 vs. ExPASy Swiss-Prot
Match: BGAL_HUMAN (Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 4.375e-12
Identity = 35/74 (47.30%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  369 PAFYVGRFSIDK--VNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPIL-HHGENLVVIFELE 581
            PAFY+G FSI     +  +DT++ F GW KG  ++N FNLGR+WP+ GPQ  L+VP  IL     N + + ELE
Sbjct:  549 PAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQLTLFVPQHILMTSAPNTITVLELE 622          
BLAST of DN617730 vs. ExPASy Swiss-Prot
Match: BGAL_CANFA (Beta-galactosidase OS=Canis familiaris GN=GLB1 PE=2 SV=3)

HSP 1 Score: 70.8626 bits (172), Expect = 5.713e-12
Identity = 35/74 (47.30%), Postives = 48/74 (64.86%), Query Frame = -1
Query:  369 PAFYVGRFSIDK--VNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPIL-HHGENLVVIFELE 581
            PAFY+G FSI     +  +DT++ F GW KG  ++N FNLGR+WP+ GPQ  L+VP  IL     N +++ ELE
Sbjct:  550 PAFYMGNFSIPSGIPDLPQDTFIQFPGWTKGQVWINGFNLGRYWPARGPQMTLFVPRHILVTSTPNTIMVLELE 623          
BLAST of DN617730 vs. ExPASy Swiss-Prot
Match: BGAL_BOVIN (Beta-galactosidase OS=Bos taurus GN=GLB1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.746e-12
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = -1
Query:  369 PAFYVGRFSIDK--VNQVKDTYLSFSGWGKGIAFVNEFNLGRFWPSFGPQCDLYVPAPIL-HHGENLVVIFELE 581
            P FYVG F+I     +  +DT++ F GW KG  ++N FNLGR+WP  GPQ  L+VP  IL     N +V+ ELE
Sbjct:  548 PTFYVGNFTIPSGIADLPQDTFIQFPGWTKGQVWINGFNLGRYWPVRGPQMTLFVPQHILVTSTPNTIVVLELE 621          
The following BLAST results are available for this feature:
BLAST of DN617730 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
BGA17_ARATH3.678e-3564.36Beta-galactosidase 17 OS=Arabidopsis thaliana GN=B... [more]
BGAL8_ORYSJ2.018e-3365.96Beta-galactosidase 8 OS=Oryza sativa subsp. japoni... [more]
BGAL1_DICDI1.230e-1439.56Beta-galactosidase 1 OS=Dictyostelium discoideum G... [more]
BGAL_FELCA1.504e-1248.65Beta-galactosidase OS=Felis catus GN=GLB1 PE=2 SV=... [more]
BGAL_MACFA1.964e-1248.65Beta-galactosidase OS=Macaca fascicularis GN=GLB1 ... [more]
BGAL_MOUSE2.565e-1247.50Beta-galactosidase OS=Mus musculus GN=Glb1 PE=2 SV... [more]
BGAL_PONAB3.349e-1248.65Beta-galactosidase OS=Pongo abelii GN=GLB1 PE=2 SV... [more]
BGAL_HUMAN4.375e-1247.30Beta-galactosidase OS=Homo sapiens GN=GLB1 PE=1 SV... [more]
BGAL_CANFA5.713e-1247.30Beta-galactosidase OS=Canis familiaris GN=GLB1 PE=... [more]
BGAL_BOVIN9.746e-1247.30Beta-galactosidase OS=Bos taurus GN=GLB1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617730 ID=DN617730; Name=DN617730; organism=Citrus sinensis; type=EST; length=602bp
TTTTCAAATAAATTTGAGTTTTTGAAATATAGATTACTAACATAAAGGTA
CATTAGACAAAGATTCATGGCATTTCTATTTACCGCACCTCCAGCCAATC
CTCTCTATCCATGTATTATACTTCAGCCAGATATCATCTTACATTGAAAA
TGAAATGTGATAGCATAAGCTAACTTCGGACAGAGAAGACATCCAGGGTC
CAACATAGCCAGAATGGAGGTAAACCGTCAAGCTCAACCTTTTATCTAGT
TTTGTCAAGTATGTCTCAAGGCATTCGGGAGTTAAAGCTGAAGCACATTT
GATTTAATTGAACCACACGTGAAGTCTGGTTGATTTACTGAATGAATTAC
AAGCTCCGAGTTTGGAGATTCCAGCTCAAATATGACCACAAGATTTTCCC
CATGATGAAGGATTGGAGCAGGGACATAAAGGTCGCATTGAGGTCCAAAA
GACGGCCAAAATCTTCCCAAGTTGAATTCGTTAACAAATGCAATCCCTTT
ACCCCACCCGCTGAACGATAAGTATGTATCTTTAACTTGGTTTACTTTGT
CAATAGAAAAGCGCCCAACATAGAATGCAGGTTCTTTTGTAATATTCCCA
GC
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