DN617716

Overview
NameDN617716
Unique NameDN617716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length571
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617716_ssr40 microsatellite DN617716_ssr40:40..51. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617716 vs. ExPASy Swiss-Prot
Match: ERF5_TOBAC (Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 3.293e-19
Identity = 59/127 (46.46%), Postives = 71/127 (55.91%), Query Frame = -3
Query:  207 SRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEV----DRGKKRKYEETEGFQRNXXXXXXXXXXXXXXXXXXXXXXXXXXSWTGFWDGE--KGIFTVPPLSPLSPYAGISPL 569
            +RVWLGTF+TA+EAAKAYD AAF+LRGSKAI+NFPLEV        E+    + G+KR   ETE  +                            SW+  W+GE  KGIF VPPLSPLSP+   S L
Sbjct:  168 TRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPLEVANFKQQDNEILQPANSGRKR-MRETENEE-----IVIKKEVKREERVPAAAAPLTPSSWSAIWEGEDGKGIFEVPPLSPLSPHMAYSQL 288          
BLAST of DN617716 vs. ExPASy Swiss-Prot
Match: EF105_ARATH (Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.408e-16
Identity = 58/129 (44.96%), Postives = 67/129 (51.94%), Query Frame = -3
Query:  201 RVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVG---GTLDSKVEVDRGKKRKYEETEGFQRNXXXXXXXXXXXXXXXXXXXXXXXXXXSWTGFWDG----EKGIFTVPPLSPLSPYAGISPLRV 566
            RVWLGTF+TA+EAA+ YD AAF+LRGSKAILNFPLE G      D+K  +    KRK + TE                               SW GFWDG    + GIF+VP LSP  P  G S L V
Sbjct:   96 RVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPLEAGKHEDLGDNKKTISLKAKRKRQVTED---ESQLISRKAVKREEAQVQADACPLTPSSWKGFWDGADSKDMGIFSVPLLSP-CPSLGHSQLVV 220          
BLAST of DN617716 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.885e-15
Identity = 50/122 (40.98%), Postives = 64/122 (52.46%), Query Frame = -3
Query:  228 RVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEV---GGTLDSKVEVDRGKKRKYE----ETEGFQRNXXXXXXXXXXXXXXXXXXXXXXXXXXSWTGFWD--GEKGIFTVPPLSPLSP 566
            R+WLGT++TAVEA +AYD AAF+LRG KAILNFPL+V     T   +  +  GK+++ +    E E   R                           SW GFWD     GIF++PPLSP SP
Sbjct:  112 RIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPLDVRVTSETCSGEGVIGLGKRKRDKGSPPEEEKAARVKVEEEESNTSETTEAEVEPVVPLTPSSWMGFWDVGAGDGIFSIPPLSPTSP 233          
BLAST of DN617716 vs. ExPASy Swiss-Prot
Match: ERF5_NICSY (Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 51/123 (41.46%), Postives = 63/123 (51.22%), Query Frame = -3
Query:  222 SRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVGG-----TLDSKVEVDRGKKRKYEETEGFQRNXXXXXXXXXXXXXXXXXXXXXXXXXXSWTGFWDG--EKGIFTVPPLSPLSPYA 569
            +RVWLGTF+TA+EAAKAYD AA++LRGSKAI+NFPLEV         + +  V+  +KR  E     Q                            SW+  WD    KGIF VPPLSP   Y+
Sbjct:  161 TRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPLEVANFKQEFNNEIRPLVNSSRKRVRETVNEEQ------LVINKEMKIEEERVPTAPLTPSSWSAIWDSGDGKGIFEVPPLSPFGAYS 277          
BLAST of DN617716 vs. ExPASy Swiss-Prot
Match: EF102_ARATH (Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.096e-14
Identity = 43/61 (70.49%), Postives = 48/61 (78.69%), Query Frame = -3
Query:  390 SRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEVDRG-KKRKYEETE 569
            SRVWLGTF+TA+EAA+AYD AAFRLRGSKAILNFPLEVG     K   D G KKRK ++ E
Sbjct:  179 SRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVG---KWKPRADEGEKKRKRDDDE 236          
BLAST of DN617716 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.026e-12
Identity = 41/64 (64.06%), Postives = 47/64 (73.44%), Query Frame = -3
Query:  390 SRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEVDRG----KKRKYEETE 569
            +RVWLGTFETA+EAA+AYD  AFRLRGSKAILNFPLEV    + + E  RG    +KR  EE E
Sbjct:  160 TRVWLGTFETAIEAARAYDKEAFRLRGSKAILNFPLEV-DKWNPRAEDGRGLYNKRKRDGEEEE 222          
BLAST of DN617716 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.301e-11
Identity = 36/69 (52.17%), Postives = 48/69 (69.57%), Query Frame = -3
Query:  375 SRVWLGTFETAVEAAKAYDNAAFRLRGSKAILNFPLEVGGTLDSKVEVDRGKKRK----YEETEGFQRN 569
            SR+WLGTFE+ V+AA+AYD AAF+LRG KA+LNFPL+ G     +   + G+KRK    +EE +  Q N
Sbjct:  133 SRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFPLDAG---KYEAPANSGRKRKRSDVHEELQRTQSN 198          
The following BLAST results are available for this feature:
BLAST of DN617716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ERF5_TOBAC3.293e-1946.46Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF105_ARATH3.408e-1644.96Ethylene-responsive transcription factor ERF105 OS... [more]
EF104_ARATH2.885e-1540.98Ethylene-responsive transcription factor ERF104 OS... [more]
ERF5_NICSY6.427e-1541.46Ethylene-responsive transcription factor 5 OS=Nico... [more]
EF102_ARATH1.096e-1470.49Ethylene-responsive transcription factor 5 OS=Arab... [more]
EF103_ARATH1.026e-1264.06Ethylene-responsive transcription factor 6 OS=Arab... [more]
EF106_ARATH3.301e-1152.17Ethylene-responsive transcription factor ERF106 OS... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01J13_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617716 ID=DN617716; Name=DN617716; organism=Citrus sinensis; type=EST; length=571bp
TTTTTTTTTTTTTTTTTAATAAATATCCCAATTCATTAAAAATAAATAAA
TCTCACAAACATAGGCCCCTAACATATCGCAACTAATTTGCGTATTGCAC
TCTAACAACTTGTGTATGTACACACACCTCTATGTCATCATATTTAATTA
TCATTTTTTTTATCACTCTACTCTACCGTCAAATATTTCCAAATTTAGCA
AACACGCAGCGGGCTAATGCCAGCATAAGGAGATAACGGAGATAACGGGG
GCACAGTAAATATCCCCTTTTCGCCATCCCAAAACCCGGTCCAACTCGAT
GGCGTCAACGGTCCAACTCCAACTCCACCTCCACTACCCACCGTTACCGT
TTCCTCCTCCTTCTTCACCACCACGTTTCTCTGAAATCCCTCGGTTTCCT
CATATTTCCTCTTCTTTCCACGGTCAACTTCCACTTTAGAATCCAAAGTC
CCGCCAACTTCGAGAGGGAAATTCAATATCGCTTTGCTTCCACGCAGCCT
AAACGCAGCGTTGTCATAAGCTTTGGCGGCTTCAACGGCAGTTTCAAAAG
TCCCAAGCCAAACCCGGCTCC
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