DN617707

Overview
NameDN617707
Unique NameDN617707
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12590 contig Csv1_Contig12590:26..588. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 248.825 bits (634), Expect = 1.330e-65
Identity = 112/148 (75.68%), Postives = 122/148 (82.43%), Query Frame = 2
Query:  119 RGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            +GT GD  GGWQ GHATFY              YGNLY QGYGTNTAALSTALFNNGL+CG+CYEMKC +DP+WCL  +I VTATNFCPPN  LSNDNGGWCNPPLQHFD+AEPAFLQIAQYRAGIVP+SFRR+PC KKGGIRFT+NG
Sbjct:   21 QGTHGD-DGGWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVPCMKKGGIRFTING 167          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA2_ARATH (Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.245e-63
Identity = 105/153 (68.63%), Postives = 123/153 (80.39%), Query Frame = 2
Query:  104 LNFCFRGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            LNFC      D  GGW+ GHATFY              YGNL+SQGYG  TAALSTALFN+G  CG+C+E++CE+DP+WC+PGSIIV+ATNFCPPN AL+NDNGGWCNPPL+HFD+AEPAFLQIAQYRAGIVP++FRR+PC K GGIRFT+NG
Sbjct:   17 LNFCLYSINSDDNGGWERGHATFYGGADASGTMGGACGYGNLHSQGYGLQTAALSTALFNSGQKCGACFELQCEDDPEWCIPGSIIVSATNFCPPNFALANDNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTING 169          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 239.965 bits (611), Expect = 6.178e-63
Identity = 103/142 (72.54%), Postives = 121/142 (85.21%), Query Frame = 2
Query:  137 YGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            YGGGW + HATFY              YGNLYSQGYGT+TAALSTALFNNGLSCGSC+E++CEND KWCLPGSI+VTATNFCPPN AL+N+NGGWCNPPL+HFD+A+P F +IAQYRAGIVP+S+RR+PC ++GGIRFT+NG
Sbjct:   22 YGGGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTING 163          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA2_ORYSJ (Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXPA2 PE=2 SV=2)

HSP 1 Score: 231.491 bits (589), Expect = 2.197e-60
Identity = 105/153 (68.63%), Postives = 117/153 (76.47%), Query Frame = 2
Query:  110 FCF--RGTFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            FCF  R    DYG  WQS HATFY              YGNLYS GYGTNTAALST LFN+G +CGSCYE++C+ND +WCLPGS+ VTATN CPPN AL ND+GGWCNPP  HFDMAEPAFLQI  YRAGIVP+S+RR+PC KKGGIRFT+NG
Sbjct:   15 FCFLARRAAADYGS-WQSAHATFYGGGDASGTMGGACGYGNLYSTGYGTNTAALSTVLFNDGAACGSCYELRCDNDGQWCLPGSVTVTATNLCPPNYALPNDDGGWCNPPRPHFDMAEPAFLQIGVYRAGIVPVSYRRVPCVKKGGIRFTING 166          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.748e-60
Identity = 99/144 (68.75%), Postives = 118/144 (81.94%), Query Frame = 2
Query:  131 GDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            G  GGGW + HATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E++C+ND KWCLPGSI+VTATNFCPPN AL N+ GGWCNPP QHFD+++P F +IAQYRAGIVP+++RR+PC ++GGIRFT+NG
Sbjct:   21 GYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTING 164          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSJ (Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.173e-59
Identity = 102/140 (72.86%), Postives = 112/140 (80.00%), Query Frame = 2
Query:  143 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GGWQS HATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C+N    CLPGSI VTATNFCPPN  L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNG
Sbjct:   22 GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNG 161          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA4_ORYSI (Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4 PE=2 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 3.173e-59
Identity = 102/140 (72.86%), Postives = 112/140 (80.00%), Query Frame = 2
Query:  143 GGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GGWQS HATFY              YGNLYSQGYGTNTAALSTALFN+G +CGSCYE++C+N    CLPGSI VTATNFCPPN  L +D+GGWCNPP  HFDMAEPAFL IAQYRAGIVP+SFRR+PC KKGG+RFTVNG
Sbjct:   22 GGWQSAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNDGAACGSCYELRCDNAGSSCLPGSITVTATNFCPPNYGLPSDDGGWCNPPRPHFDMAEPAFLHIAQYRAGIVPVSFRRVPCVKKGGVRFTVNG 161          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 5.412e-59
Identity = 99/143 (69.23%), Postives = 116/143 (81.12%), Query Frame = 2
Query:  140 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGS--IIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GG WQ+ HATFY              YGNLYSQGYGTNTAALSTALFNNG+SCG+C+E+KC NDP+WC  GS  I++TATNFCPPNLA  +DNGGWCNPP +HFD+A P FL+IAQYRAGIVP+S+RR+PC K+GGIRFT+NG
Sbjct:   28 GGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTING 170          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 2.057e-58
Identity = 98/154 (63.64%), Postives = 119/154 (77.27%), Query Frame = 2
Query:  110 FCFRG---TFGDYGGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPGSIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            FCF     +   Y  GW + HATFY              YGNLYSQGYGTNTAALSTALFNNGLSCG+C+E+KC++D  WCLPG+IIVTATNFCPPN AL N+ GGWCNPPL HFD+++P F +IAQY+AG+VP+S+RR+PC ++GGIRFT+NG
Sbjct:   14 FCFAAMVCSVHGYDAGWVNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTING 167          
BLAST of DN617707 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 1.741e-57
Identity = 99/143 (69.23%), Postives = 113/143 (79.02%), Query Frame = 2
Query:  140 GGGWQSGHATFYXXXXXXXXXXXXXXYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMKCENDPKWCLPG--SIIVTATNFCPPNLALSNDNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPISFRRIPCAKKGGIRFTVNG 562
            GG W + HATFY              YGNLYSQGYG NTAALSTALFNNGLSCGSC+E+KC NDP WCLPG  SI++TATNFCPPN   ++DNGGWCNPP +HFD+A P FL IA+Y+AGIVP+S+RRIPC KKGGIRFT+NG
Sbjct:   29 GGPWINAHATFYGEADASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIPCRKKGGIRFTING 171          
The following BLAST results are available for this feature:
BLAST of DN617707 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
EXPA8_ARATH1.330e-6575.68Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]
EXPA2_ARATH1.245e-6368.63Expansin-A2 OS=Arabidopsis thaliana GN=EXPA2 PE=2 ... [more]
EXP10_ARATH6.178e-6372.54Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXPA2_ORYSJ2.197e-6068.63Expansin-A2 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA1_ARATH3.748e-6068.75Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXPA4_ORYSJ3.173e-5972.86Expansin-A4 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXPA4_ORYSI3.173e-5972.86Expansin-A4 OS=Oryza sativa subsp. indica GN=EXPA4... [more]
EXPA4_ARATH5.412e-5969.23Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP15_ARATH2.057e-5863.64Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA9_ARATH1.741e-5769.23Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617707 ID=DN617707; Name=DN617707; organism=Citrus sinensis; type=EST; length=563bp
CTCTCTTTTTCTTTACAAAAAAACACATAAACATAAGCAGCCAGCAGTAG
CAGCCATGACCAATATTGCAGCATCATCTAGTGTTGCTCTCCTTTTGTTT
GTGCTCAATTTTTGCTTTCGTGGCACATTTGGAGACTATGGTGGTGGGTG
GCAAAGTGGCCATGCAACTTTCTATGGCGGGGGTGATGCTTCCGGCACAA
TGGGTGGTGCTTGTGGGTATGGCAATTTGTACAGCCAAGGCTATGGGACT
AACACTGCAGCACTCAGTACCGCTCTATTCAACAATGGCCTAAGCTGTGG
TTCATGCTATGAAATGAAATGTGAAAATGACCCCAAGTGGTGCCTCCCCG
GCTCCATCATTGTCACCGCCACCAACTTCTGCCCACCTAACCTTGCCCTG
TCTAACGACAACGGCGGTTGGTGCAATCCTCCCCTCCAGCACTTTGACAT
GGCTGAGCCCGCTTTCTTGCAAATTGCCCAATACCGCGCCGGTATCGTCC
CAATTTCCTTCAGAAGGATCCCGTGTGCGAAGAAAGGAGGAATAAGGTTT
ACCGTCAATGGAC
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