DN617705

Overview
NameDN617705
Unique NameDN617705
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig119 contig Csv1_Contig119:83..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617705 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.329e-47
Identity = 104/195 (53.33%), Postives = 129/195 (66.15%), Query Frame = 3
Query:   21 ERKRG-PKGKKYPNYKEVDDEIGEYSEASSDERNGYPVQXXXXXXXXXXXXXYSGAVGAPLSNKDQSEEDGPVCEGGYDYLRPSENTRNNHVVEEAXXXXXXXXXRRLTQIVSPVSPQKFGSLSALEARPGSLSKRMPDELEEGEIAVSGDSHMDHQQSGSWTHDRDEGEDEQVLQPKIKRKRSIRVRPRHTVER 602
            ERKRG PK KK  NYKE++D+I  YSE SS+ERN                   +GA+G   +NK + + + PVC  GYDY   S + + N   ++A          R  ++ SPVS QKFGSLSAL+ RPGS+SKR+ D+LEEGEIA SGDSH+D Q+SGSW HDRDEG++EQVLQP IKRKRSIR+RPR T ER
Sbjct: 1606 ERKRGRPKSKKI-NYKEIEDDIAGYSEESSEERNIDSGNEEEGDIRQFDDDELTGALGDHQTNKGEFDGENPVC--GYDYPPGSGSYKKNPPRDDAGSSGSSPESHRSKEMASPVSSQKFGSLSALDTRPGSVSKRLLDDLEEGEIAASGDSHIDLQRSGSWAHDRDEGDEEQVLQPTIKRKRSIRLRPRQTAER 1797          
The following BLAST results are available for this feature:
BLAST of DN617705 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BRM_ARATH4.329e-4753.33ATP-dependent helicase BRM OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01J07_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617705 ID=DN617705; Name=DN617705; organism=Citrus sinensis; type=EST; length=612bp
ATTCTGGTGAAATTGAAACAGAAAGAAAAAGGGGACCCAAGGGGAAAAAG
TATCCTAATTACAAGGAAGTTGATGATGAAATTGGAGAATATTCTGAAGC
AAGCTCTGATGAGAGGAATGGATATCCTGTGCAGGAAGAAGAGGGAGAAA
TTGGAGAGTTTGAAGATGATGAATACAGTGGTGCTGTTGGGGCACCACTG
AGTAACAAAGACCAATCAGAAGAAGATGGTCCAGTTTGCGAAGGTGGTTA
TGACTATCTCCGGCCTTCAGAAAACACAAGAAACAATCATGTAGTTGAGG
AAGCTGGTTCTTCAGGATCATCTTCGAACAGTCGAAGATTGACACAGATA
GTATCTCCTGTTTCCCCTCAGAAATTTGGGTCTCTGTCTGCATTAGAAGC
TAGGCCAGGTTCTCTTTCAAAGAGGATGCCAGATGAGTTAGAAGAGGGAG
AGATTGCAGTATCTGGAGATTCTCACATGGACCACCAGCAATCTGGAAGT
TGGACTCATGATCGTGACGAAGGTGAAGATGAACAGGTTTTGCAGCCTAA
GATCAAACGAAAGCGTAGTATTCGAGTTCGACCCCGTCATACTGTTGAAA
GGCCAGAGGAGA
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