DN617704

Overview
NameDN617704
Unique NameDN617704
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length607
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8200 contig Csv1_Contig8200:100..705. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617704 vs. ExPASy Swiss-Prot
Match: BRM_ARATH (ATP-dependent helicase BRM OS=Arabidopsis thaliana GN=BRM PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.610e-22
Identity = 66/137 (48.18%), Postives = 75/137 (54.74%), Query Frame = -3
Query:  219 RIRVQIPQKXXXXXXXXXXXXXXXQPDDSP---HPGELVICKKKRKDREKXXXXXXXXXXXXXXXS----LGRNIKSPGLGLVPKDMRHTQQTTHQHGWANQPAQPANGGSG--AVGWANPVKRLRTDAGKRRPSQL 602
            RIRVQIPQK                 D+SP   HPGELVICKKKRKDREK                    +GR ++SP  G VP++ R  QQ      W NQP  P N G+   +VGWANPVKRLRTD+GKRRPS L
Sbjct: 2067 RIRVQIPQKETKLGGTTSHT------DESPILAHPGELVICKKKRKDREKSGPKTRTGGSSSPVSPPPAMIGRGLRSPVSGGVPRETRLAQQQR----WPNQPTHPNNSGAAGDSVGWANPVKRLRTDSGKRRPSHL 2193          
The following BLAST results are available for this feature:
BLAST of DN617704 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BRM_ARATH3.610e-2248.18ATP-dependent helicase BRM OS=Arabidopsis thaliana... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01J07_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617704 ID=DN617704; Name=DN617704; organism=Citrus sinensis; type=EST; length=607bp
GCAGGTGATGAAACTACTCGGATTCCAATAATGGATAAGCAGGTTTACAA
TGAGCGAATCAAAGACCTACACTATGTTAACAGTATGAACTAACTGCACT
TGTACAGGCCTGCCTGGAAGGGCTGGCTGCTTGTACACTGCATTTTGTAC
CCAACAGCAACAATTTTTCCTTTTTTTCCCTAATTACAAAGACATTATCT
ATCCTCCAAACCAATTCATAATTGACTTGGCCGCCTTTTGCCAGCATCTG
TTCTCAACCTCTTAACAGGATTTGCCCAACCAACAGCCCCGCTACCACCA
TTTGCTGGTTGAGCAGGCTGGTTGGCCCACCCATGCTGGTGGGTAGTTTG
CTGAGTATGACGCATATCCTTAGGTACCAAACCTAGACCTGGACTTTTGA
TATTACGACCCAAGCTAGGTGGTGAGACAGGGCCAGATACAGATCTTGGC
TTCACCACTGACTTTTCCCTGTCTTTTCTCTTCTTCTTGCAGATAACCAG
CTCCCCTGGATGTGGAGAATCATCCGGCTGAGATTGCTCTCGACTACTGC
CACTTCCACTTCCAAGCCTTGATTCCTTCTGTGGTATTTGGACTCTAATC
CTAATGT
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