DN617703

Overview
NameDN617703
Unique NameDN617703
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5745 contig Csv1_Contig5745:1..724. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617703 vs. ExPASy Swiss-Prot
Match: RING3_ARATH (E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 5.296e-48
Identity = 102/158 (64.56%), Postives = 109/158 (68.99%), Query Frame = -3 
Query:  268 YRSPPRPLPYDADPRYFRLQHEGLVSRREKGSSQFHEESEPLRSDNDVESESFSAGD-KW--NDSSCED-GSKEQRXXXXXXXXXXXXXAGFAY----IYSPSEDEDVCPTCLEEYTPENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMVFDET 717
            +RS PRPLPYDADPRYFR     LVSRREKGSS  HEE EPLRSD+D +SESF  G  KW  N S+  D  SKE+                       +Y  SEDEDVCPTCLEEYT ENPKIVTKCSHHFHL CIYEWMERSENCPVCGKVM F+ET
Sbjct:   77 FRSTPRPLPYDADPRYFR----SLVSRREKGSSHSHEEVEPLRSDSDADSESFGVGGCKWANNKSTLSDKDSKEEYSSKSSLRILRSRSKSIMADSENMYILSEDEDVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNET 230
The following BLAST results are available for this feature:
BLAST of DN617703 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RING3_ARATH5.296e-4864.56E3 ubiquitin-protein ligase At3g02290 OS=Arabidops... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01J06_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617703 ID=DN617703; Name=DN617703; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTACCACAACTAAAATCATGTTTCTCTTCATTCCACTCACACT
TCAATGTAAAATGCTATTTTTCTGGAGGCCAAAGCCAGATTTTCAGTAAC
ACAAGGGGAAAATCATCAATGATTTGAATGACACTTTTTGTATTTACTGT
AGCCGACACAAATGACTTCATATTCACAAATGGATTTACAGGTCTCCTTT
GATTTAAACATTCTTTCTTCAGTTGTTGCTGGTTCCATCCACGAACAAAA
CCTTTGAAAGATCAAGTCGTTTCATCAAAAACCATCACCTTGCCACAGAC
AGGGCAGTTTTCACTTCTCTCCATCCATTCATAAATACAACCAAGGTGGA
AATGGTGAGAACATTTTGTCACTATTTTGGGGTTCTCTGGCGTATATTCT
TCAAGACATGTTGGACAGACATCTTCATCTTCTGATGGAGAATAAATATA
CGCAAATCCAGCTGTTGATTTTGCCGATGAAAGCGTAACTGAGGATTTAG
AACGTTGTTCTTTCGATCCATCTTCACAGGATGAATCATTCCACTTGTCT
CCTGCACTAAAAGATTCCGATTCCACATCATTGTCACTTCTTAGAGGTTC
TGACTCCTCATGGAATTGGCTTGAACCCTTCTCACGCCTTGAAACCAATC
CTTCATGTTGCAAGCGGAAATATCTAGGATCAGCATCATAAGGCAAGGGT
CTCGGAGGAGATCGGTACATAT
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