DN617700

Overview
NameDN617700
Unique NameDN617700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length601
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:729..1329. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617700 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 1.632e-35
Identity = 55/80 (68.75%), Postives = 70/80 (87.50%), Query Frame = -3
Query:  360 SCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 599
            +CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  380 TCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of DN617700 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.805e-34
Identity = 55/73 (75.34%), Postives = 66/73 (90.41%), Query Frame = -3
Query:  381 SCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 599
            +CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  372 TCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of DN617700 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.763e-32
Identity = 54/80 (67.50%), Postives = 63/80 (78.75%), Query Frame = -3
Query:  357 CPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 596
            C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  262 CAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of DN617700 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 6.217e-27
Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = -3
Query:  384 SCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 599
            SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  391 SCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of DN617700 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 3.304e-20
Identity = 37/76 (48.68%), Postives = 47/76 (61.84%), Query Frame = -3
Query:  381 CPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 596
            CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  401 CPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
The following BLAST results are available for this feature:
BLAST of DN617700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RD21A_ARATH1.632e-3568.75Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
ORYA_ORYSJ1.805e-3475.34Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
CYSPL_SOLLC3.763e-3267.50Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ6.217e-2765.28Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ3.304e-2048.68Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01J05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617700 ID=DN617700; Name=DN617700; organism=Citrus sinensis; type=EST; length=601bp
TTTTTTTTTTTTTTTTTCGTGATTCAAGAAGAATCGTTAAATATCAATTC
ATAAAAGCCTCCGCTGAATGACGCCAGGGATTTGGTAGAGGACATTGGAA
ATAGATAACAACAATTTGTTTGTGCATTGTTCAGATTCAACGCAGATAGA
TAACTTACAACGCTATATACCAAACCAACGTCCGAATAAATATTTAACAG
ACCATCCACCTGCCGGTACATTAACGTTTGGAATGAAATGCAGTAGAATG
AACTAAGGCCGGGGAGAAACTCATTCACAAGCACGAATATTTTCATCCTC
CCTTCGGCCTTCCACTGCTCTTACAGTGCCAACTATAATTAAGCACTGCT
ACTTCCACCTTGATTTCCATGAGCCCAGTAAGGTTTAGCAGGGGTGCGTC
GTAATGCCCTCACTCCCAATGGGTTGTCCTTGCTCATCAAGCAGGTCCCA
GCACGAACATTACAGATGGGATAGTCATGTGGGCAGCAGCTATAGTGGTC
ATCACAGCAGGTGGCAGCCTCAAGCGGGCAGCATCCCCATGCAAAGCAAG
AGTTACCATACTCAAAGACACAGCAGCAAGTGTTGCTCTCAGGGCAAGAG
T
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