DN617697

Overview
NameDN617697
Unique NameDN617697
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length484
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:259..742. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 1.510e-28
Identity = 66/80 (82.50%), Postives = 68/80 (85.00%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+TRCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   60 KVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDST 139
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.364e-28
Identity = 65/80 (81.25%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:   59 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 138
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 123.25 bits (308), Expect = 5.738e-28
Identity = 64/80 (80.00%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:   60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.738e-28
Identity = 64/80 (80.00%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:   60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.738e-28
Identity = 64/80 (80.00%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRA            AQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:   60 KVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_RAT (40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 7.494e-28
Identity = 65/80 (81.25%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 7.494e-28
Identity = 65/80 (81.25%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 7.494e-28
Identity = 65/80 (81.25%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS14_CRIGR (40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3)

HSP 1 Score: 122.865 bits (307), Expect = 7.494e-28
Identity = 65/80 (81.25%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   61 KVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617697 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 7.494e-28
Identity = 64/80 (80.00%), Postives = 67/80 (83.75%), Query Frame = 3 
Query:    3 KVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXXAQSALRALARSGMKIGRIEDVTPIPTDST 242
            KVKADRDESSPYAAMLA+QDV+ RCKELGITALHIKLRA            AQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:   60 KVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139
The following BLAST results are available for this feature:
BLAST of DN617697 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS14_LUPLU1.510e-2882.5040S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS141_MAIZE3.364e-2881.2540S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS143_ARATH5.738e-2880.0040S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS142_ARATH5.738e-2880.0040S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS141_ARATH5.738e-2880.0040S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS14_RAT7.494e-2881.2540S ribosomal protein S14 OS=Rattus norvegicus GN=... [more]
RS14_MOUSE7.494e-2881.2540S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN7.494e-2881.2540S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
RS14_CRIGR7.494e-2881.2540S ribosomal protein S14 OS=Cricetulus griseus GN... [more]
RS142_MAIZE7.494e-2880.0040S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617697 ID=DN617697; Name=DN617697; organism=Citrus sinensis; type=EST; length=484bp
TGAAGGTGAAAGCTGACCGAGATGAGTCCTCTCCATACGCTGCCATGCTT
GCAGCACAAGATGTTTCAACCAGATGCAAGGAGCTTGGAATCACTGCTCT
TCATATTAAGCTGCGTGCTACTGGTGGGAACAAAACCAAAACACCTGGTC
CAGGTGCCCAGTCTGCTCTTCGTGCCCTTGCTCGTTCTGGGATGAAAATT
GGTCGCATAGAGGATGTGACCCCTATTCCCACTGATAGCACACGCAGAAA
GGGTGGTAGAAGAGGAAGAAGGCTTTAAGCTGTGTTGTTTGTCCGATTGT
CTTGTTTTATGCGGGCATTCTGAATGGGACAGTTGTTCCTTAAAGTTAGT
TGAAGTTACTTTTCAATTTTGGAACTAATTTATAGTTTTATCTGTCGCTA
TTAAAAGATTTTATTTTCCTGCTTTTTGTAAAAACAATAGGCGGCCTTGA
GAGCATATGGCATTACTGGTGTCTTGCAAAAAAA
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