DN617696

Overview
NameDN617696
Unique NameDN617696
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length488
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig888 contig Csv1_Contig888:256..743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_LUPLU (40S ribosomal protein S14 OS=Lupinus luteus GN=RPS14 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 1.201e-28
Identity = 67/81 (82.72%), Postives = 70/81 (86.42%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+TRCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   59 MKVKADRDESSPYAAMLAAQDVATRCKELGITALHIKLRATGGNKTKTPGRGAQSALRALARSGMKIGRIEDVTPIPSDST 139
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS141_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.675e-28
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:   58 MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 138
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS143_ARATH (40S ribosomal protein S14-3 OS=Arabidopsis thaliana GN=RPS14C PE=2 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 4.563e-28
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRA           GAQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:   59 MKVKADRDESSPYAAMLAAQDVAQRCKELGITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS142_ARATH (40S ribosomal protein S14-2 OS=Arabidopsis thaliana GN=RPS14B PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.563e-28
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRA           GAQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:   59 MKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS141_ARATH (40S ribosomal protein S14-1 OS=Arabidopsis thaliana GN=RPS14A PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 4.563e-28
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCKELGITA+H+KLRA           GAQSALRALARSGMKIGRIEDVTPIPTDST
Sbjct:   59 MKVKADRDESSPYAAMLAAQDVAQRCKELGITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDST 139
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_RAT (40S ribosomal protein S14 OS=Rattus norvegicus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   60 MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_MOUSE (40S ribosomal protein S14 OS=Mus musculus GN=Rps14 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   60 MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_HUMAN (40S ribosomal protein S14 OS=Homo sapiens GN=RPS14 PE=1 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   60 MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS14_CRIGR (40S ribosomal protein S14 OS=Cricetulus griseus GN=RPS14 PE=2 SV=3)

HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28
Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLAAQDV+ RCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTPIP+DST
Sbjct:   60 MKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDST 140
[Close]
BLAST of DN617696 vs. ExPASy Swiss-Prot
Match: RS142_MAIZE (40S ribosomal protein S14 OS=Zea mays PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 5.959e-28
Identity = 65/81 (80.25%), Postives = 69/81 (85.19%), Query Frame = -3 
Query:  244 VKVKADRDESSPYAAMLAAQDVSTRCKELGITALHIKLRAXXXXXXXXXXXGAQSALRALARSGMKIGRIEDVTPIPTDST 486
            +KVKADRDESSPYAAMLA+QDV+ RCKELGITALHIKLRA           GAQSALRALARSGMKIGRIEDVTP+PTDST
Sbjct:   59 MKVKADRDESSPYAAMLASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDST 139
The following BLAST results are available for this feature:
BLAST of DN617696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 82
Match NameE-valueIdentityDescription
RS14_LUPLU1.201e-2882.7240S ribosomal protein S14 OS=Lupinus luteus GN=RPS... [more]
RS141_MAIZE2.675e-2881.4840S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]
RS143_ARATH4.563e-2880.2540S ribosomal protein S14-3 OS=Arabidopsis thalian... [more]
RS142_ARATH4.563e-2880.2540S ribosomal protein S14-2 OS=Arabidopsis thalian... [more]
RS141_ARATH4.563e-2880.2540S ribosomal protein S14-1 OS=Arabidopsis thalian... [more]
RS14_RAT5.959e-2881.4840S ribosomal protein S14 OS=Rattus norvegicus GN=... [more]
RS14_MOUSE5.959e-2881.4840S ribosomal protein S14 OS=Mus musculus GN=Rps14... [more]
RS14_HUMAN5.959e-2881.4840S ribosomal protein S14 OS=Homo sapiens GN=RPS14... [more]
RS14_CRIGR5.959e-2881.4840S ribosomal protein S14 OS=Cricetulus griseus GN... [more]
RS142_MAIZE5.959e-2880.2540S ribosomal protein S14 OS=Zea mays PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01J03_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001J03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617696 ID=DN617696; Name=DN617696; organism=Citrus sinensis; type=EST; length=488bp
TTTTTTTTTGCAGACACCAGTAATGCCATATGCTCTCAAGGCCGCCTATT
GTTTTTACAAAAAGCAGGAAAATAAAATCTTTTAATAGCGACAGATAAAA
CTATAAATTAGTTCCAAAATTGAAAAGTAACTTCAACTAACTTTAAGGAA
CAACTGTCCCATTCAGAATGCCCGCATAAAACAAGACAATCGGACAAACA
ACACAGCTTAAAGCCTTCTTCCTCTTCTACCACCCTTTCTGCGTGTGCTA
TCAGTGGGAATAGGGGTCACATCCTCTATGCGACCAATTTTCATCCCAGA
ACGAGCAAGGGCACGAAGAGCAGACTGGGCACCTGGACCAGGTGTTTTGG
TTTTGTTCCCACCAGTAGCACGCAGCTTAATATGAAGAGCAGTGATTCCA
AGCTCCTTGCATCTGGTTGAAACATCTTGTGCTGCAAGCATGGCAGCGTA
TGGAGAGGACTCATCTCGGTCAGCTTTCACCTTCACCT
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