DN617690

Overview
NameDN617690
Unique NameDN617690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617690 vs. ExPASy Swiss-Prot
Match: IST1_RAT (IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 40/99 (40.40%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  254 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSV 550
            GFK  + +  L+L I R+KLL  ++    ++ R++IA  L  G++  ARIRVEHI+RE+ ++ A EILELYC+L++ R  +I++ +E    L E++S++
Sbjct:    5 GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTL 103          
BLAST of DN617690 vs. ExPASy Swiss-Prot
Match: IST1_PONAB (IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 40/99 (40.40%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  254 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSV 550
            GFK  + +  L+L I R+KLL  ++    ++ R++IA  L  G++  ARIRVEHI+RE+ ++ A EILELYC+L++ R  +I++ +E    L E++S++
Sbjct:    5 GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTL 103          
BLAST of DN617690 vs. ExPASy Swiss-Prot
Match: IST1_MOUSE (IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 40/99 (40.40%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  254 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSV 550
            GFK  + +  L+L I R+KLL  ++    ++ R++IA  L  G++  ARIRVEHI+RE+ ++ A EILELYC+L++ R  +I++ +E    L E++S++
Sbjct:    5 GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTL 103          
BLAST of DN617690 vs. ExPASy Swiss-Prot
Match: IST1_HUMAN (IST1 homolog OS=Homo sapiens GN=KIAA0174 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 40/99 (40.40%), Postives = 67/99 (67.68%), Query Frame = 2
Query:  254 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSV 550
            GFK  + +  L+L I R+KLL  ++    ++ R++IA  L  G++  ARIRVEHI+RE+ ++ A EILELYC+L++ R  +I++ +E    L E++S++
Sbjct:    5 GFKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTL 103          
BLAST of DN617690 vs. ExPASy Swiss-Prot
Match: IST1_BOVIN (IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.229e-15
Identity = 39/99 (39.39%), Postives = 66/99 (66.67%), Query Frame = 2
Query:  254 GFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSV 550
            G K  + +  L+L I R+KLL  ++    ++ R++IA  L  G++  ARIRVEHI+RE+ ++ A EILELYC+L++ R  +I++ +E    L E++S++
Sbjct:    5 GIKAERLRVNLRLVINRLKLLEKKKTELAQKARKEIADYLAAGKDERARIRVEHIIREDYLVEAMEILELYCDLLLARFGLIQSMKELDSGLAESVSTL 103          
BLAST of DN617690 vs. ExPASy Swiss-Prot
Match: IST1L_DICDI (IST1-like protein OS=Dictyostelium discoideum GN=DDB_G0289029 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.102e-15
Identity = 38/104 (36.54%), Postives = 68/104 (65.38%), Query Frame = 2
Query:  245 FNKGFKGSKCKTLLKLAIPRIKLLRNRREIQIKQMRRDIAKLLETGQEATARIRVEHIVREENMMAAQEILELYCELIVVRLPIIETQRECPLDLKEAISSVCF 556
            F   +   K K  LKLA+ RI++L+N++   ++  +R++A+LL    E +ARIRVE I+R+E ++   +I+E+ CEL+  R+ +I    E PL++KE+I ++ +
Sbjct:    4 FGPSYDSYKLKVQLKLAVSRIQILKNKKANIVRDEKRNVAELLRKKNEESARIRVETIIRDEYLIECFQIIEVLCELLHARINLINATTEMPLEMKESIFTLVY 107          
The following BLAST results are available for this feature:
BLAST of DN617690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
IST1_RAT2.477e-1640.40IST1 homolog OS=Rattus norvegicus GN=Ist1 PE=2 SV=... [more]
IST1_PONAB2.477e-1640.40IST1 homolog OS=Pongo abelii GN=IST1 PE=2 SV=1[more]
IST1_MOUSE2.477e-1640.40IST1 homolog OS=Mus musculus GN=Ist1 PE=2 SV=1[more]
IST1_HUMAN2.477e-1640.40IST1 homolog OS=Homo sapiens GN=KIAA0174 PE=1 SV=1[more]
IST1_BOVIN1.229e-1539.39IST1 homolog OS=Bos taurus GN=IST1 PE=2 SV=1[more]
IST1L_DICDI6.102e-1536.54IST1-like protein OS=Dictyostelium discoideum GN=D... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01I23_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617690 ID=DN617690; Name=DN617690; organism=Citrus sinensis; type=EST; length=557bp
GGCTTCTTCTTGTCAAATTGTCGAAAGCAAGTTTCCTTAAACCATAAGCA
AAAGAGAGACTCGCTGCTACGCGTCGTCGTATCGAGAATATAAAATTGTA
GCAGTTGAATCCAATCCATTACGTATATAAACCTTCTTATCTCTTTGATA
TCTCTCCAGTCAAATCAAATTCAAGTAATATCAAAGGATAAAAAAGACTG
CAGTTCTGATCTGATCTTTGATCATGTCGATGCTCGATTCTTTCTTCAAC
AAGGGCTTCAAAGGATCTAAATGCAAAACCCTTCTGAAATTGGCGATTCC
GCGCATAAAGTTGCTTAGGAACAGAAGAGAGATTCAGATTAAGCAAATGC
GCCGTGACATTGCCAAGCTCCTTGAGACTGGCCAAGAAGCCACAGCTCGC
ATTCGGGTAGAGCATATAGTAAGGGAAGAAAATATGATGGCTGCTCAAGA
GATCCTTGAGCTGTATTGCGAGCTTATTGTTGTCCGCCTTCCAATTATCG
AAACACAAAGGGAATGCCCTCTTGACTTGAAAGAAGCAATATCTAGTGTG
TGTTTCG
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