DN617684

Overview
NameDN617684
Unique NameDN617684
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1127..1703. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_SOYBN (Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.847e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 376          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSJ (Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.847e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT3_ORYSI (Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 2.847e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 377          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT2_DAUCA (Actin-2 OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.847e-18
Identity = 42/42 (100.00%), Postives = 42/42 (100.00%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF
Sbjct:  340 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 381          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT13_SOLTU (Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.342e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 377          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT12_SOLTU (Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 6.342e-18
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWI+KGEYDESGPSIVHRKCF
Sbjct:  316 ERKYSVWIGGSILASLSTFQQMWITKGEYDESGPSIVHRKCF 357          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_FUCVE (Actin OS=Fucus vesiculosus PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  335 ERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 376          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_FUCDI (Actin OS=Fucus distichus PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  334 ERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 375          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT_COSCS (Actin (Fragment) OS=Costaria costata PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  290 ERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 331          
BLAST of DN617684 vs. ExPASy Swiss-Prot
Match: ACT7_ARATH (Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.413e-17
Identity = 41/42 (97.62%), Postives = 41/42 (97.62%), Query Frame = -2
Query:  451 ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 576
            ERKYSVWIGGSILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:  336 ERKYSVWIGGSILASLSTFQQMWISKSEYDESGPSIVHRKCF 377          
The following BLAST results are available for this feature:
BLAST of DN617684 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 326
Match NameE-valueIdentityDescription
ACT3_SOYBN2.847e-18100.00Actin-3 OS=Glycine max GN=SAC3 PE=3 SV=2[more]
ACT3_ORYSJ2.847e-18100.00Actin-3 OS=Oryza sativa subsp. japonica GN=ACT3 PE... [more]
ACT3_ORYSI2.847e-18100.00Actin-3 OS=Oryza sativa subsp. indica GN=ACT3 PE=2... [more]
ACT2_DAUCA2.847e-18100.00Actin-2 OS=Daucus carota PE=2 SV=1[more]
ACT13_SOLTU6.342e-1897.62Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1[more]
ACT12_SOLTU6.342e-1897.62Actin-100 (Fragment) OS=Solanum tuberosum GN=AC100... [more]
ACT_FUCVE1.413e-1797.62Actin OS=Fucus vesiculosus PE=2 SV=1[more]
ACT_FUCDI1.413e-1797.62Actin OS=Fucus distichus PE=2 SV=1[more]
ACT_COSCS1.413e-1797.62Actin (Fragment) OS=Costaria costata PE=3 SV=2[more]
ACT7_ARATH1.413e-1797.62Actin-7 OS=Arabidopsis thaliana GN=ACT7 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I20_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617684 ID=DN617684; Name=DN617684; organism=Citrus sinensis; type=EST; length=577bp
TATTGAATAACCAAATTTATTGACTGCAAGCTGACACTAATTAAAGTTTT
CTCATACAATAGCTATTAACATTAATGTTCCTTTTGAGAGGGGGAGAAAA
AAAACCTTCAAATATGAAAATTTAGAAAATGAAATAGAAAAGCATCACAA
CCACTCTTCATCTCCAGCTACAAACATCCTACTTTAAAAAAAAAAAAGGA
AAAAAAAGAAAAAAGACTTGGTTGAACACCAGATGAATGCAAGGCAAGGA
AGACGGTTGAGTACAGAAATAAGCCCCCCTCAAACGCTGTAAGAAGCTTG
TATAATAACATCAATATCGAGATATGCCTCCTTCAATGGCCCCAACCTTA
GCACTTCTCCATGTCAACCAACTTGAGTTCGCGAAACGAGACACAAAAAA
CCAACTAAATGGAAAAAAAGAACTCACCCATCAAGCACTTAAAGAACTTA
GAAGCATTTCCTGTGGACAATGGATGGACCAGACTCATCATACTCGCCCT
TTGAGATCCACATCTGCTGGAAGGTGCTGAGGGATGCAAGGATTGATCCT
CCAATCCAAACACTGTATTTTCTCTCT
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