DN617672

Overview
NameDN617672
Unique NameDN617672
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6055 contig Csv1_Contig6055:14..790. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_ORYSJ (60S ribosomal protein L3 OS=Oryza sativa subsp. japonica GN=RPL3 PE=2 SV=2)

HSP 1 Score: 379.022 bits (972), Expect = 1.561e-104
Identity = 178/196 (90.82%), Postives = 188/196 (95.92%), Query Frame = -1
Query:  191 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 778
            KVDY Y FFEK+IPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKKVYK+GK GQESH   TEFDRTEKDITPMGGFPHYG+VK DYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIK+KFIDTSSKFGHGRFQTT EKQ+++G++KA
Sbjct:  194 KVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIGKSGQESHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLKA 389          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL31_ARATH (60S ribosomal protein L3-1 OS=Arabidopsis thaliana GN=ARP1 PE=2 SV=5)

HSP 1 Score: 362.459 bits (929), Expect = 1.512e-99
Identity = 168/194 (86.60%), Postives = 185/194 (95.36%), Query Frame = -1
Query:  197 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRM 778
            KVD+AY FFEKQIP++AVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTE+NKK+Y+LGK G E+HT +TE+DRTEKD+TPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLL QTSRLALEEIK+KFIDT+S FGHGRFQT+ EK ++Y R+
Sbjct:  194 KVDFAYSFFEKQIPIEAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTELNKKIYRLGKVGTEAHTAMTEYDRTEKDVTPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLTQTSRLALEEIKLKFIDTASIFGHGRFQTSLEKMRFYNRV 387          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL32_ARATH (60S ribosomal protein L3-2 OS=Arabidopsis thaliana GN=ARP2 PE=2 SV=4)

HSP 1 Score: 360.918 bits (925), Expect = 4.398e-99
Identity = 168/193 (87.05%), Postives = 184/193 (95.34%), Query Frame = -1
Query:  200 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGR 778
            KVDYA   FEKQ+PVDA+FQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVS+TVARAGQNGYHHRTEMNKKVY++GK GQE+H+ +TE+DRTEKDITPMGGFPHYGIVK+DYLMIKGCCVGPKKRVVTLRQ+LLKQTSRLA+EEIK+KFID +S  GHGRFQT+QEK K+YGR
Sbjct:  194 KVDYACSLFEKQVPVDAIFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYRVGKVGQETHSAMTEYDRTEKDITPMGGFPHYGIVKEDYLMIKGCCVGPKKRVVTLRQTLLKQTSRLAMEEIKLKFIDAASNGGHGRFQTSQEKAKFYGR 386          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_TOXCA (60S ribosomal protein L3 OS=Toxocara canis GN=RPL3 PE=2 SV=2)

HSP 1 Score: 279.641 bits (714), Expect = 1.289e-74
Identity = 129/198 (65.15%), Postives = 160/198 (80.81%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG---GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KVD+A    EKQ+PVD+VF +DEMID IGVTKGKG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RV FTVARAGQ GYHHRTE+NKK+Y+LGK     +    G T++D TEK + PMGGFPHYG+V  D++MI+GCCVG KKR +TLR+SL+ QT R A E+I +K+IDTSSKFGHGRFQT  EK+ + G++K
Sbjct:  193 KVDWAREHLEKQVPVDSVFAQDEMIDCIGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVQFTVARAGQKGYHHRTEVNKKIYRLGKSCLTEEGKKNGGTDYDITEKSVNPMGGFPHYGLVNQDFVMIRGCCVGSKKRPITLRKSLIVQTKRFAHEKINLKWIDTSSKFGHGRFQTHAEKRAFMGKLK 390          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_ASHGO (60S ribosomal protein L3 OS=Ashbya gossypii GN=RPL3 PE=3 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.021e-71
Identity = 128/195 (65.64%), Postives = 155/195 (79.49%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KVD+A   FEK + VD+VF+++EMID+I VTKG G+EGV  RWG  +LPRKTHRGLRKVACIGAWHPA V +TVARAGQNGYHHRT +N KVY++GKGG E +   TEFDRT+K ITPMGGF HYG V +D++M+KG   G +KRVVTLR+SL   TSR ALEE+ +K+IDT+SKFG GRFQT  EK  + G +K
Sbjct:  192 KVDWAREHFEKTVSVDSVFEQNEMIDVIAVTKGHGFEGVTHRWGTKKLPRKTHRGLRKVACIGAWHPAHVMWTVARAGQNGYHHRTSINHKVYRIGKGGDEGNAA-TEFDRTKKTITPMGGFVHYGAVNNDFVMVKGSIPGTRKRVVTLRKSLYTSTSRRALEEVNLKWIDTASKFGKGRFQTPAEKHAFMGTLK 385          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_MOUSE (60S ribosomal protein L3 OS=Mus musculus GN=Rpl3 PE=2 SV=2)

HSP 1 Score: 269.24 bits (687), Expect = 1.742e-71
Identity = 127/201 (63.18%), Postives = 161/201 (80.10%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            K+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+FTVARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  193 KLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFTVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_DROME (60S ribosomal protein L3 OS=Drosophila melanogaster GN=RpL3 PE=1 SV=3)

HSP 1 Score: 268.085 bits (684), Expect = 3.880e-71
Identity = 127/201 (63.18%), Postives = 155/201 (77.11%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKGGQE------SHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            KV +A    EK I V  VF +DEMID +GVTKGKG++GV +RW   +LPRKTH+GLRKVACIGAWHP+RVS TVARAGQ GYHHRTE+NKK+Y++G G          +   TE+D T+K ITPMGGFPHYG V +D++MIKGCC+G KKR++TLR+SLLK T R ALE+IK+KFIDTSSK GHGRFQT  +K  + G +K
Sbjct:  193 KVKWAREHLEKPIQVSNVFGQDEMIDCVGVTKGKGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVSTTVARAGQKGYHHRTEINKKIYRIGAGIHTKDGKVIKNNASTEYDLTDKSITPMGGFPHYGEVNNDFVMIKGCCIGSKKRIITLRKSLLKHTKRSALEQIKLKFIDTSSKMGHGRFQTPADKLAFMGPLK 393          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_RAT (60S ribosomal protein L3 OS=Rattus norvegicus GN=Rpl3 PE=1 SV=3)

HSP 1 Score: 267.7 bits (683), Expect = 5.067e-71
Identity = 126/201 (62.69%), Postives = 161/201 (80.10%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            K+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  193 KLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_DICDI (60S ribosomal protein L3 OS=Dictyostelium discoideum GN=rpl3 PE=1 SV=2)

HSP 1 Score: 267.7 bits (683), Expect = 5.067e-71
Identity = 125/200 (62.50%), Postives = 157/200 (78.50%), Query Frame = -1
Query:  191 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKG----GQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMKA 778
            KV++A   FEK + V  VF ++E+ID+IGVTKGKG+ GV+ RWGV +LPRKTH+GLRKVACIGAWHP+RVS TV RAGQ GYHHR E NKK+Y++G+     G++  TG TEFD TEK I PMGGF HYG+VK ++LM+KGC  GP+KR +TLR+S+  QT R ALE+I +KFIDTSSKFGHG  QT ++K KY+G  K+
Sbjct:  194 KVNFAVANFEKTVNVTGVFAENELIDVIGVTKGKGFNGVIKRWGVRKLPRKTHKGLRKVACIGAWHPSRVSTTVPRAGQLGYHHRVERNKKIYRIGQAQPEDGKQISTGKTEFDLTEKTINPMGGFAHYGMVKHEFLMLKGCVAGPRKRALTLRKSITTQTGRAALEKITLKFIDTSSKFGHGLHQTAEDKTKYFGVKKS 393          
BLAST of DN617672 vs. ExPASy Swiss-Prot
Match: RL3_HUMAN (60S ribosomal protein L3 OS=Homo sapiens GN=RPL3 PE=1 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 6.618e-71
Identity = 126/201 (62.69%), Postives = 161/201 (80.10%), Query Frame = -1
Query:  194 KVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGK------GGQESHTGITEFDRTEKDITPMGGFPHYGIVKDDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKIKFIDTSSKFGHGRFQTTQEKQKYYGRMK 778
            K+D+A    E+Q+PV+ VF +DEMID+IGVTKGKGY+GV +RW   +LPRKTHRGLRKVACIGAWHPARV+F+VARAGQ GYHHRTE+NKK+YK+G+      G    +   T++D ++K I P+GGF HYG V +D++M+KGC VG KKRV+TLR+SLL QT R ALE+I +KFIDT+SKFGHGRFQT +EK+ + G +K
Sbjct:  193 KLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLK 393          
The following BLAST results are available for this feature:
BLAST of DN617672 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 84
Match NameE-valueIdentityDescription
RL3_ORYSJ1.561e-10490.8260S ribosomal protein L3 OS=Oryza sativa subsp. ja... [more]
RL31_ARATH1.512e-9986.6060S ribosomal protein L3-1 OS=Arabidopsis thaliana... [more]
RL32_ARATH4.398e-9987.0560S ribosomal protein L3-2 OS=Arabidopsis thaliana... [more]
RL3_TOXCA1.289e-7465.1560S ribosomal protein L3 OS=Toxocara canis GN=RPL3... [more]
RL3_ASHGO1.021e-7165.6460S ribosomal protein L3 OS=Ashbya gossypii GN=RPL... [more]
RL3_MOUSE1.742e-7163.1860S ribosomal protein L3 OS=Mus musculus GN=Rpl3 P... [more]
RL3_DROME3.880e-7163.1860S ribosomal protein L3 OS=Drosophila melanogaste... [more]
RL3_RAT5.067e-7162.6960S ribosomal protein L3 OS=Rattus norvegicus GN=R... [more]
RL3_DICDI5.067e-7162.5060S ribosomal protein L3 OS=Dictyostelium discoide... [more]
RL3_HUMAN6.618e-7162.6960S ribosomal protein L3 OS=Homo sapiens GN=RPL3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS11_01I13_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617672 ID=DN617672; Name=DN617672; organism=Citrus sinensis; type=EST; length=778bp
TTTTTTAAATTTAAAAATATTCAATAGAATAAAGCACGACCATCTCTTAA
AAAATAAAATAAAAAAAAGGAAAAAGAAACACAGCTGATGCCAGGCTCAA
AAACTGTTCCAAGATAGTCAAACTGGATAAAATTTAGACTGCCTGAATTA
ACTATAACGGTGCAAAACTCTTGTCTTTTTAGCATAATTATGCTTTCATG
CGTCCATAGTACTTCTGTTTCTCCTGTGTAGTCTGGAAGCGGCCATGCCC
AAACTTGGAAGAGGTATCAATGAACTTGATTTTGATTTCCTCAAGAGCTA
AACGAGATGTCTGTTTGAGAAGCGACTGACGAAGCGTGACCACCCTCTTC
TTAGGTCCAACACAGCATCCCTTGATCATCAAATAATCATCTTTCACAAT
ACCATAGTGAGGAAAGCCACCCATTGGGGTAATGTCCTTCTCAGTCCTGT
CAAATTCAGTTATGCCAGTGTGAGACTCCTGTCCACCCTTGCCAAGCTTG
TAAACCTTCTTGTTCATTTCAGTACGATGATGGTATCCATTCTGACCAGC
TCTGGCAACTGTGAAGGAAACCCTAGCAGGATGCCAGGCACCAATACAAG
CCACCTTACGCAGACCTCTGTGAGTCTTGCGAGGAAGGCGGGTAACACCC
CAACGGGTGACAACACCTTCATAACCTTTACCTTTCGTGACACCGATGAT
GTCAATCATCTCATCCTTCTGGAAAACAGCATCAACAGGAATTTGCTTTT
CAAAGAAGCCATATGCATAGTCAACTTT
back to top