DN617669

Overview
NameDN617669
Unique NameDN617669
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length322
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1638 contig Csv1_Contig1638:74..395. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DN617669 vs. ExPASy Swiss-Prot
Match: RL39_ORYSJ (60S ribosomal protein L39 OS=Oryza sativa subsp. japonica GN=RPL39 PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.192e-14
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3
Query:    3 KKKLANKMTQNRPIPHWIRMRTDNTIRYNAECMYWRRSKLGF 128
            KKKLA KM QNRPIP+WIRMRTDNTIRYNA+  +WRR+KLGF
Sbjct:   10 KKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of DN617669 vs. ExPASy Swiss-Prot
Match: RL39_MAIZE (60S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.192e-14
Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 3
Query:    3 KKKLANKMTQNRPIPHWIRMRTDNTIRYNAECMYWRRSKLGF 128
            KKKLA KM QNRPIP+WIRMRTDNTIRYNA+  +WRR+KLGF
Sbjct:   10 KKKLAKKMRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of DN617669 vs. ExPASy Swiss-Prot
Match: RL391_ARATH (60S ribosomal protein L39-1 OS=Arabidopsis thaliana GN=RPL39A PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 4.169e-14
Identity = 33/42 (78.57%), Postives = 37/42 (88.10%), Query Frame = 3
Query:    3 KKKLANKMTQNRPIPHWIRMRTDNTIRYNAECMYWRRSKLGF 128
            KKKL  KM QNRPIPHWIR+RTDNTIRYNA+  +WRR+KLGF
Sbjct:   10 KKKLGKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51          
BLAST of DN617669 vs. ExPASy Swiss-Prot
Match: RL392_ARATH (60S ribosomal protein L39-2 OS=Arabidopsis thaliana GN=RPL39B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.341e-12
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = 3
Query:    3 KKKLANKMTQNRPIPHWIRMRTDNTIRYNAECMYWRRSKLGF 128
            KKKL  KM QNRPIP+WIR+RTDN IRYNA+  +WRR+KLGF
Sbjct:   10 KKKLGKKMRQNRPIPNWIRLRTDNKIRYNAKRRHWRRTKLGF 51          
BLAST of DN617669 vs. ExPASy Swiss-Prot
Match: RL39_SPOFR (60S ribosomal protein L39 OS=Spodoptera frugiperda GN=RpL39 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.634e-11
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 3
Query:    3 KKKLANKMTQNRPIPHWIRMRTDNTIRYNAECMYWRRSKL 122
            K+KLA K+ QNRPIP W+RMRT NTIRYNA+  +WRR+KL
Sbjct:   10 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
BLAST of DN617669 vs. ExPASy Swiss-Prot
Match: RL39_PLUXY (60S ribosomal protein L39 OS=Plutella xylostella GN=RpL39 PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.634e-11
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 3
Query:    3 KKKLANKMTQNRPIPHWIRMRTDNTIRYNAECMYWRRSKL 122
            K+KLA K+ QNRPIP W+RMRT NTIRYNA+  +WRR+KL
Sbjct:   10 KRKLAKKLKQNRPIPQWVRMRTGNTIRYNAKRRHWRRTKL 49          
The following BLAST results are available for this feature:
BLAST of DN617669 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RL39_ORYSJ3.192e-1480.9560S ribosomal protein L39 OS=Oryza sativa subsp. j... [more]
RL39_MAIZE3.192e-1480.9560S ribosomal protein L39 OS=Zea mays GN=RPL39 PE=... [more]
RL391_ARATH4.169e-1478.5760S ribosomal protein L39-1 OS=Arabidopsis thalian... [more]
RL392_ARATH1.341e-1273.8160S ribosomal protein L39-2 OS=Arabidopsis thalian... [more]
RL39_SPOFR5.634e-1170.0060S ribosomal protein L39 OS=Spodoptera frugiperda... [more]
RL39_PLUXY5.634e-1170.0060S ribosomal protein L39 OS=Plutella xylostella G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01I12_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617669 ID=DN617669; Name=DN617669; organism=Citrus sinensis; type=EST; length=322bp
TCAAGAAGAAGCTTGCCAATAAGATGACGCAAAACAGGCCCATCCCTCAC
TGGATCCGTATGCGCACCGACAACACCATCAGATACAACGCAGAGTGCAT
GTACTGGCGCCGCTCAAAGCTTGGATTCTAAGGTGATTAGGATCAGATGG
ATTTGTTGTTGAGTTTGTTTTAAGCTTATGTTCGAGTAATTTATACTATG
ATACCTGCCCTTATGTTTTATATTTAGTTTTGAGAAACTCATTTGTATAA
GGAACTCATTGAGAGTCCTTATTTTATTTTGTGCCCTCTTGATTTGATTT
GGACTTATGAAATTTGACTTGT
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