DN617662

Overview
NameDN617662
Unique NameDN617662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length657
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: ALIS3_ARATH (ALA-interacting subunit 3 OS=Arabidopsis thaliana GN=ALIS3 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 2.077e-61
Identity = 113/139 (81.29%), Postives = 120/139 (86.33%), Query Frame = -1
Query:  223 WAKKFSPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 639
            +  K  P NFQ G + GGA LD  IPLS+QEDLIVWMRTAALPTFRKLYGKIE DLE  D I V L NNYNTYSF+GKKKLVLSTTSWLGGKNDFLGIAYLTVGG+CF LAL+FTI+YLVKPRRLGDPSYLSWNRNPGG
Sbjct:  210 FGNKVFPKNFQKGNITGGATLDPRIPLSEQEDLIVWMRTAALPTFRKLYGKIESDLEMGDTIHVKLNNNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFILALAFTIMYLVKPRRLGDPSYLSWNRNPGG 348          

HSP 2 Score: 22.7126 bits (47), Expect = 2.077e-61
Identity = 7/12 (58.33%), Postives = 10/12 (83.33%), Query Frame = -3
Query:  620 DRDHKLGKEVFP 655
            D++HK G +VFP
Sbjct:  205 DKEHKFGNKVFP 216          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: ALIS1_ARATH (ALA-interacting subunit 1 OS=Arabidopsis thaliana GN=ALIS1 PE=1 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.262e-60
Identity = 110/139 (79.14%), Postives = 120/139 (86.33%), Query Frame = -1
Query:  223 WAKKFSPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 639
            + K   P NFQ G L GGA LD + PLS QEDLIVWMRTAALPTFRKLYGKIE DLE+ + I V L+NNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGG+CF LAL+FT++YLVKPRRLGDP+YLSWNR PGG
Sbjct:  211 FGKNVFPKNFQKGNLTGGASLDPNKPLSDQEDLIVWMRTAALPTFRKLYGKIESDLEKGENIQVTLQNNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGICFVLALAFTVMYLVKPRRLGDPTYLSWNRIPGG 349          

HSP 2 Score: 24.2534 bits (51), Expect = 2.262e-60
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = -3
Query:  620 DRDHKLGKEVFP 655
            D++HK GK VFP
Sbjct:  206 DKEHKFGKNVFP 217          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: ALIS4_ARATH (Putative ALA-interacting subunit 4 OS=Arabidopsis thaliana GN=ALIS4 PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 1.210e-58
Identity = 104/141 (73.76%), Postives = 122/141 (86.52%), Query Frame = -1
Query:  223 TSWAKKFSPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 645
            + + K   P NFQ G+LIGG  LD+ IPLS+QEDLIVWMRTAALPTFRKLYGKI+ DL+  D I V+L+NNYNTYSF+GKKKLVLSTTSWLGG+NDFLGIAYLTVG +C FLA+SF+++YL KPR+LGDPSYLSWNR+ GG
Sbjct:  211 SKFGKNVFPKNFQKGSLIGGKSLDQDIPLSEQEDLIVWMRTAALPTFRKLYGKIDTDLQAGDTIKVLLQNNYNTYSFNGKKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVSFSVLYLAKPRQLGDPSYLSWNRSAGG 351          

HSP 2 Score: 21.9422 bits (45), Expect = 1.210e-58
Identity = 8/12 (66.67%), Postives = 9/12 (75.00%), Query Frame = -3
Query:  620 DRDHKLGKEVFP 655
            DR+ K GK VFP
Sbjct:  208 DRESKFGKNVFP 219          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: ALIS5_ARATH (ALA-interacting subunit 5 OS=Arabidopsis thaliana GN=ALIS5 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 5.396e-56
Identity = 102/139 (73.38%), Postives = 117/139 (84.17%), Query Frame = -1
Query:  223 WAKKFSPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNRNPGG 639
            + K   P NFQ G  IGG  L+ S PLS+QEDLIVWMRTAALPTFRKLYGKIE DL   D I V+L+NNYNTYSF+G+KKLVLSTTSWLGG+NDFLGIAYLTVG +C FLA++F ++YLVKPR+LGDPSYLSWNR+ GG
Sbjct:  210 FGKNVFPKNFQKGAPIGGGTLNISKPLSEQEDLIVWMRTAALPTFRKLYGKIETDLHAGDTITVLLQNNYNTYSFNGQKKLVLSTTSWLGGRNDFLGIAYLTVGSICLFLAVTFAVLYLVKPRQLGDPSYLSWNRSAGG 348          

HSP 2 Score: 22.7126 bits (47), Expect = 5.396e-56
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = -3
Query:  620 DRDHKLGKEVFP 655
            DR++K GK VFP
Sbjct:  205 DRENKFGKNVFP 216          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: ALIS2_ARATH (Putative ALA-interacting subunit 2 OS=Arabidopsis thaliana GN=ALIS2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.531e-42
Identity = 82/135 (60.74%), Postives = 100/135 (74.07%), Query Frame = -1
Query:  235 WAKKFSPSNFQNGTLIGGAHLDESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNR 639
            + K   P NFQNGTLIGGA LD  IPLS QED IVWMR AAL +FRKLYG+IE DLE   +++V L NNYNTYSFSG+KKL+LST++WLGG+NDFLGI YL VG     +++ F +++L  PR  GD    SWN+
Sbjct:  207 FGKNVYPINFQNGTLIGGAKLDPKIPLSDQEDFIVWMRAAALLSFRKLYGRIEEDLEPGKVVEVNLMNNYNTYSFSGQKKLILSTSNWLGGRNDFLGITYLVVGSSSIVISIIFMLLHLKNPRPYGDN---SWNK 338          

HSP 2 Score: 24.2534 bits (51), Expect = 4.531e-42
Identity = 8/12 (66.67%), Postives = 10/12 (83.33%), Query Frame = -3
Query:  620 DRDHKLGKEVFP 655
            DR+HK GK V+P
Sbjct:  202 DREHKFGKNVYP 213          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: YNI7_SCHPO (Uncharacterized protein C11B10.07c OS=Schizosaccharomyces pombe GN=SPBC11B10.07c PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.733e-21
Identity = 57/137 (41.61%), Postives = 79/137 (57.66%), Query Frame = -1
Query:  235 SWAKKFSPSNFQNGTLIGGAHLDESIP-LSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWNR 642
            +WAK F      NG      + D++IP +S  +   +WMR AALPTF KL  +      +  I ++ +  N+    + G K ++ STTS +GGKN FLGI Y  +GGLC    +  +I  L+KPRR+GDP YLSWNR
Sbjct:  242 NWAKMFP-----NG------YTDDNIPDVSTWDAFQIWMRAAALPTFSKLALRNVTTALQPGIYEMNITYNFPVTEYKGTKTIMFSTTSVIGGKNYFLGILYFVIGGLCAASGVILSIACLIKPRRVGDPRYLSWNR 367          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: CC50A_CHICK (Cell cycle control protein 50A OS=Gallus gallus GN=TMEM30A PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.953e-21
Identity = 49/93 (52.69%), Postives = 63/93 (67.74%), Query Frame = -1
Query:  286 EDLIVWMRTAALPTFRKLYGKIEVDLEENDIID-----VILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVY 549
            ED IVWMRTAALPTFRKLY  IE        +      + +  NY  +SF G+K+++LST SW+GGKN FLGIAY+TVG +CFFL +   I++
Sbjct:  266 EDFIVWMRTAALPTFRKLYRLIERKSNLQPTLQAGKYSLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITVGSICFFLGVVLLIIH 358          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: CC50A_MOUSE (Cell cycle control protein 50A OS=Mus musculus GN=Tmem30a PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 9.722e-19
Identity = 49/104 (47.12%), Postives = 65/104 (62.50%), Query Frame = -1
Query:  289 DESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVI--------LENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 576
            DES      ED IVWMRTAALPTFRKLY  IE     +D+   +        +  NY  +SF G+K+++LST SW+GGKN FLGIAY+T+G + F L +   ++
Sbjct:  249 DESNNGFINEDFIVWMRTAALPTFRKLYRLIE---RRDDLHPTLPAGQYFLNITYNYPVHSFDGRKRMILSTISWMGGKNPFLGIAYITIGSISFLLGVVLLVI 349          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: MUG89_SCHPO (Meiotically up-regulated gene 89 protein OS=Schizosaccharomyces pombe GN=mug89 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.658e-18
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  238 LSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIIDVILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIVYLVKPRRLGDPSYLSWN 561
            LS  E+L VWMRTA LPTF KL  + + D       ++ +   +   SF G K LVL+T S LGGKN FLGIAY+ V  +C  L   FT+ + ++PR+L D  YL+W+
Sbjct:  275 LSTMENLQVWMRTAGLPTFSKLAMRNDNDDIFPGTYEIKIGLFFPVKSFDGTKSLVLTTRSVLGGKNPFLGIAYIVVSAVCVVLGTVFTLRHFIRPRKLADHRYLNWD 382          
BLAST of DN617662 vs. ExPASy Swiss-Prot
Match: CC50A_RAT (Cell cycle control protein 50A OS=Rattus norvegicus GN=Tmem30a PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.301e-18
Identity = 47/101 (46.53%), Postives = 64/101 (63.37%), Query Frame = -1
Query:  289 DESIPLSKQEDLIVWMRTAALPTFRKLYGKIEVDLEENDIID-----VILENNYNTYSFSGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLALSFTIV 576
            DES      ED IVWMRTAALPTFRKLY  IE   + +  +      + +  NY  + F G+K+++LST SW+GGKN FLGIAY+T+G + F L +   ++
Sbjct:  213 DESNNGFINEDFIVWMRTAALPTFRKLYRLIERTDDLHPTLPAGQYYLNITYNYPVHFFDGRKRMILSTISWMGGKNPFLGIAYITIGSISFLLGVVLLVI 313          
The following BLAST results are available for this feature:
BLAST of DN617662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
ALIS3_ARATH2.077e-6181.29ALA-interacting subunit 3 OS=Arabidopsis thaliana ... [more]
ALIS1_ARATH2.262e-6079.14ALA-interacting subunit 1 OS=Arabidopsis thaliana ... [more]
ALIS4_ARATH1.210e-5873.76Putative ALA-interacting subunit 4 OS=Arabidopsis ... [more]
ALIS5_ARATH5.396e-5673.38ALA-interacting subunit 5 OS=Arabidopsis thaliana ... [more]
ALIS2_ARATH4.531e-4260.74Putative ALA-interacting subunit 2 OS=Arabidopsis ... [more]
YNI7_SCHPO2.733e-2141.61Uncharacterized protein C11B10.07c OS=Schizosaccha... [more]
CC50A_CHICK7.953e-2152.69Cell cycle control protein 50A OS=Gallus gallus GN... [more]
CC50A_MOUSE9.722e-1947.12Cell cycle control protein 50A OS=Mus musculus GN=... [more]
MUG89_SCHPO1.658e-1845.37Meiotically up-regulated gene 89 protein OS=Schizo... [more]
CC50A_RAT6.301e-1846.53Cell cycle control protein 50A OS=Rattus norvegicu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I08_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617662 ID=DN617662; Name=DN617662; organism=Citrus sinensis; type=EST; length=657bp
TTTTTTTTTGATGAAAACTAGTCATTGTATTGAGCTAATTCACAAATTAT
ACATAAGATTCACCAGGAACAACATCCTATTGTCCAAAAATTCAATAAAA
CAACCAGAATACTTTTTTAAACAGAGGAGATATTTTGTCATTAAATACCG
GTACACAAAATTACATCAACCACTTTTGAGATAGCCAATCCATCTACTCA
GGTTCCAGAAATTTGCTTAGTGCCCTCCTGGATTTCTGTTCCATGACAGG
TAGGAAGGATCTCCAAGTCGCCTTGGCTTTACCAGATATACTATAGTGAA
TGACAGGGCCAAAAAGAAGCACAAGCCTCCAACGGTGAGATAAGCAATGC
CAAGGAAGTCGTTCTTTCCACCAAGCCAGCTAGTGGTTGAAAGAACAAGC
TTCTTCTTGCCACTAAAACTGTACGTGTTGTAGTTGTTTTCCAATATCAC
ATCGATAATATCATTCTCTTCAAGATCCACCTCTATTTTCCCATACAGCT
TCCTAAAAGTGGGCAAAGCTGCTGTCCGCATCCAAACTATAAGGTCCTCT
TGCTTACTCAATGGTATGGATTCATCAAGATGTGCACCACCTATCAGAGT
CCCATTTTGGAAGTTACTAGGGGAAAACTTCTTTGCCCAACTTGTGATCC
CTATCAC
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