DN617661

Overview
NameDN617661
Unique NameDN617661
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617661_ssr175 microsatellite DN617661_ssr175:175..186. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1783 contig Csv1_Contig1783:30..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DN617661 vs. ExPASy Swiss-Prot
Match: AIR12_ARATH (Auxin-induced in root cultures protein 12 OS=Arabidopsis thaliana GN=AIR12 PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.204e-21
Identity = 62/168 (36.90%), Postives = 90/168 (53.57%), Query Frame = 2 
Query:  146 AQQTCGRQAFNNNKVYSTCTDLPVLNSFLHWNYDQSTNTVDLAFRHT-TTSSSRWVAWALNPSGQRMAGSQCLVAFQNSTG-RPVAYTTPIGSGSPTLQPGSLSFQVPNISA-TLEGNQWTIFAXXXXXXXXXXXXXVWQ-EGPMNGDTPGAHAMSGDNARSVGTIDF 637
            +QQ C  Q  N+   + +C DLPVLNS+LH+ Y+ S +++ +AF  T + ++  WVAWA+NP+G +MAGSQ  +A+++  G  PV  T  I S S +L  G L+F   N+ A +L G +  IF              VWQ  G +    PG H    DN  S   + F
Sbjct:   25 SQQACKSQNLNSAGPFDSCEDLPVLNSYLHYTYNSSNSSLSVAFVATPSQANGGWVAWAINPTGTKMAGSQAFLAYRSGGGAAPVVKTYNISSYS-SLVEGKLAFDFWNLRAESLSGGRIAIFTTVKVPAGADSVNQVWQIGGNVTNGRPGVHPFGPDNLGSHRVLSF 191
The following BLAST results are available for this feature:
BLAST of DN617661 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
AIR12_ARATH6.204e-2136.90Auxin-induced in root cultures protein 12 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01I08_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617661 ID=DN617661; Name=DN617661; organism=Citrus sinensis; type=EST; length=666bp
CCTTGGGGAAACACTTCCAGTGCTTTCGGGAACTTGTTTTCATTTCAAGG
ATTTGATCTGCTTCCTCTAGATCAACATGGTGAACAAAGCTATAGCATGT
GCTTTGTTCTTTAGTTTCGTTGCTGCTCTTTTTGCTTCATCATATGCACA
ACAAACTTGCGGACGCCAGGCTTTCAACAACAACAAAGTATACAGTACAT
GCACAGATCTTCCCGTGCTGAATTCATTTCTCCACTGGAATTATGATCAG
TCAACAAACACCGTCGATCTCGCCTTCCGGCACACGACCACGAGCTCATC
CCGATGGGTGGCATGGGCACTGAACCCATCAGGCCAAAGAATGGCAGGCT
CACAGTGTCTTGTGGCCTTTCAAAACTCAACTGGGCGTCCCGTGGCTTAT
ACTACTCCTATTGGTTCTGGCTCGCCGACGCTGCAACCGGGTAGTTTGAG
CTTCCAAGTGCCAAATATTTCAGCCACTCTTGAGGGAAATCAATGGACTA
TTTTTGCAACTTTGCAGCTTACTAACAATTTGTTGTCAACTAACCAAGTT
TGGCAAGAAGGTCCAATGAACGGTGATACTCCTGGCGCCCATGCCATGAG
CGGTGATAATGCAAGATCAGTTGGTACCATTGATTTTAGAACCGGACAGA
CCACAGCAGGTGGTGG
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