DN617657

Overview
NameDN617657
Unique NameDN617657
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4228 contig Csv1_Contig4228:890..1542. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: HM13_HUMAN (Minor histocompatibility antigen H13 OS=Homo sapiens GN=HM13 PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 2.807e-26
Identity = 69/141 (48.94%), Postives = 92/141 (65.25%), Query Frame = -2
Query:  263 KSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK----TAAVVSQESSDAKTSKKVE 652
            KSF+APIKL+FP +D       A  F+MLGLGD+VIPGIF+AL LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     +  GEV ++  ++ES      A   S+E ++A  SK +E
Sbjct:  234 KSFEAPIKLVFP-QDLLEKGLEANNFAMLGLGDVVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVTEMFSYEESNPKDPAAVTESKEGTEASASKGLE 373          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: HM13_MOUSE (Minor histocompatibility antigen H13 OS=Mus musculus GN=Hm13 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 8.167e-26
Identity = 69/142 (48.59%), Postives = 92/142 (64.79%), Query Frame = -2
Query:  263 KSFDAPIKLLFPTRDT------ARPFSMLGLGDIVIPGIFVALALRFDVSRGKGSR-YFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK-----TAAVVSQESSDAKTSKKVE 652
            KSF+APIKL+FP +D       A  F+MLGLGDIVIPGIF+AL LRFD+S  K +  YF ++F  Y  GL LTI +M+ F+ AQPALLY+VPA IGF     +  GEV ++  ++ES            +ES++A  SK++E
Sbjct:  234 KSFEAPIKLVFP-QDLLEKGLEADNFAMLGLGDIVIPGIFIALLLRFDISLKKNTHTYFYTSFAAYIFGLGLTIFIMHIFKHAQPALLYLVPACIGFPVLVALAKGEVAEMFSYEESNPKDPAAETESKEESTEASASKRLE 374          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: IMP2_CAEEL (Intramembrane protease 2 OS=Caenorhabditis elegans GN=imp-2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.633e-16
Identity = 56/130 (43.08%), Postives = 69/130 (53.08%), Query Frame = -2
Query:  320 KSFDAPIKLLFPTRD------TARPFSMLGLGDIVIPGIFVALALRFD-----------VSRG--KGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEFDESK 652
            K  DAPI L FP          A   SMLGLGDIVIPGIF+AL  RFD             +G  KG  YF    + Y  GL +T+ VM+ F+AAQPALLY+VP  +       +  GE+  L  +DES+
Sbjct:  321 KGIDAPILLQFPQDIYRNGIMEASKHSMLGLGDIVIPGIFIALLRRFDYRVVQTTAESKAPQGSLKGRYYFVVTVVAYMAGLFITMAVMHHFKAAQPALLYLVPCCLFVPLLLAVIRGELSALWNYDESR 450          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: YL8H_SCHPO (Probable intramembrane protease C25B8.17 OS=Schizosaccharomyces pombe GN=SPAC25B8.17 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.172e-14
Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = -2
Query:  332 DAPIKLLFPTRDTARPFSMLGLGDIVIPGIFVALALRFDV--------SRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQLLEF 643
            D P K + P        SMLGLGDIV+PG+ +AL  RFD+           K S YF++ F+ Y +GL +T   + +F+AAQPALLY+ PA I        +  E+K L  F
Sbjct:  167 DIPAKYVLPQFKNPTRLSMLGLGDIVMPGLMLALMYRFDLHYYINSTSQPKKHSTYFRNTFIAYGLGLGVTNFALYYFKAAQPALLYLSPACIVAPLLTAWYRDELKTLFSF 278          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: YKK0_YEAST (Probable intramembrane protease YKL100C OS=Saccharomyces cerevisiae GN=YKL100C PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.087e-13
Identity = 47/146 (32.19%), Postives = 77/146 (52.74%), Query Frame = -2
Query:  290 SFDAPIKLLFPTR-DTARP---FSMLGLGDIVIPGIFVALALRFDVSR---------------GKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEVKQL-------LEFDESKTAAVVSQESS 649
            + D P+KL  P + +TA+    FS+LGLGDI +PG+F+A+  ++D+ +                   +YF +A + Y   LV  ++ ++ F  AQPALLYIVP+++        WN + KQ        +E D+S   A+  +E+S
Sbjct:  382 NLDIPVKLSLPVKFNTAQNNFNFSILGLGDIALPGMFIAMCYKYDIWKWHLDHDDTEFHFLNWSYVGKYFITAMVSYVASLVSAMVSLSIFNTAQPALLYIVPSLLISTILVACWNKDFKQFWNFQYDTIEVDKSLKKAIEKKENS 527          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: PSL1_HUMAN (Signal peptide peptidase-like 2B OS=Homo sapiens GN=SPPL2B PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.725e-13
Identity = 35/84 (41.67%), Postives = 50/84 (59.52%), Query Frame = -2
Query:  350 RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 601
            RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y VGL++T + +   Q  QPALLY+VP  +    A  +W  E+
Sbjct:  412 RPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRVYFVACTIAYGVGLLVTFVALALMQRGQPALLYLVPCTLVTSCAVALWRREL 495          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: PSL1_CHICK (Signal peptide peptidase-like 2B OS=Gallus gallus GN=SPPL2B PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.766e-12
Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = -2
Query:  350 RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 601
            RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y +GL++T + +   Q  QPALLY+VP  +    +  +W  E+
Sbjct:  408 RPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRVYFVACTIAYGIGLLVTFVALALMQMGQPALLYLVPCTLITSFSVALWRKEL 491          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: PSL1_MOUSE (Signal peptide peptidase-like 2B OS=Mus musculus GN=Sppl2b PE=2 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 2.307e-12
Identity = 37/102 (36.27%), Postives = 56/102 (54.90%), Query Frame = -2
Query:  350 PIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 637
            P+ L  P  +T+      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y +GL++T + +   Q  QPALLY+VP  +       +W  E+
Sbjct:  387 PMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALVLMQRGQPALLYLVPCTLLTSCTVALWRREL 488          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: PSL2_HUMAN (Signal peptide peptidase-like 2A OS=Homo sapiens GN=SPPL2A PE=1 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.013e-12
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = -2
Query:  389 PFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVI 598
            P S+LG GDI++PG+ +A   RFDV  G    Y+ S+ + Y +G++LT +V+   +  QPALLY+VP  +
Sbjct:  404 PVSILGFGDIIVPGLLIAYCRRFDVQTGSSYIYYVSSTVAYAIGMILTFVVLVLMKKGQPALLYLVPCTL 473          
BLAST of DN617657 vs. ExPASy Swiss-Prot
Match: PSL1_RAT (Signal peptide peptidase-like 2B OS=Rattus norvegicus GN=Sppl2b PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.767e-12
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = -2
Query:  350 PIKLLFPTRDTA------RPFSMLGLGDIVIPGIFVALALRFDVSRGKGSRYFKSAFLGYTVGLVLTIIVMNWFQAAQPALLYIVPAVIGFLAAHCIWNGEV 637
            P+ L  P  +T+      RPFS+LG GDI++PG+ VA   RFD+       YF +  + Y +GL++T + +   +  QPALLY+VP  +       +W  E+
Sbjct:  387 PMVLKVPRLNTSPLSLCDRPFSLLGFGDILVPGLLVAYCHRFDIQVQSSRIYFVACTIAYGLGLLVTFVALVLMRHGQPALLYLVPCTLLTSCTVALWRREM 488          
The following BLAST results are available for this feature:
BLAST of DN617657 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
HM13_HUMAN2.807e-2648.94Minor histocompatibility antigen H13 OS=Homo sapie... [more]
HM13_MOUSE8.167e-2648.59Minor histocompatibility antigen H13 OS=Mus muscul... [more]
IMP2_CAEEL2.633e-1643.08Intramembrane protease 2 OS=Caenorhabditis elegans... [more]
YL8H_SCHPO7.172e-1440.18Probable intramembrane protease C25B8.17 OS=Schizo... [more]
YKK0_YEAST2.087e-1332.19Probable intramembrane protease YKL100C OS=Sacchar... [more]
PSL1_HUMAN2.725e-1341.67Signal peptide peptidase-like 2B OS=Homo sapiens G... [more]
PSL1_CHICK1.766e-1239.29Signal peptide peptidase-like 2B OS=Gallus gallus ... [more]
PSL1_MOUSE2.307e-1236.27Signal peptide peptidase-like 2B OS=Mus musculus G... [more]
PSL2_HUMAN3.013e-1242.86Signal peptide peptidase-like 2A OS=Homo sapiens G... [more]
PSL1_RAT8.767e-1235.29Signal peptide peptidase-like 2B OS=Rattus norvegi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS11_01I05_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617657 ID=DN617657; Name=DN617657; organism=Citrus sinensis; type=EST; length=653bp
TTTTTAAGTATAATAGCATTTAAAAAATTAAATTAAATAAAGAAAAAAAT
CACAAAATATATCTGAAATAGTTGTCTCACTATAGTTGTCTCACTATAAG
AGGCTAAAATATTATTTCTTGCTTAATGCCAAAATCTTTTACAATTGTTT
GCAGGTTGCATAAGTTAGCTTGGATTGAGCTTGCACAGCGTTGATCCTCA
AAAGGAGAAATAAAAGATATTTCTTTGCTAAAATGGTCCATTGTAGATGG
CATTTTAAATTATTCGACTTTCTTGCTAGTTTTGGCATCGCTACTTTCTT
GTGACACAACCGCGGCAGTCTTAGACTCATCAAACTCCAACAACTGTTTG
ACTTCGCCGTTCCATATGCAGTGAGCGGCCAAGAATCCAATTACAGCAGG
CACAATATACAAAAGTGCAGGCTGTGCAGCCTGAAACCAGTTCATGACAA
TGATTGTTAGGACTAAACCAACTGTATATCCCAGAAAAGCGCTCTTGAAG
TACCGGCTTCCTTTCCCTCTGGACACATCAAATCGCAATGCTAGTGCCAC
AAAGATACCAGGAATTACAATGTCGCCAAGTCCAAGCATGGAAAATGGTC
GGGCAGTGTCTCTCGTTGGGAACAAAAGCTTGATAGGAGCGTCAAAAGAT
TTT
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