DN617656

Overview
NameDN617656
Unique NameDN617656
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617656_ssr10 microsatellite DN617656_ssr10:10..25. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617656 vs. ExPASy Swiss-Prot
Match: PPA27_ARATH (Probable inactive purple acid phosphatase 27 OS=Arabidopsis thaliana GN=PAP27 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.527e-30
Identity = 68/124 (54.84%), Postives = 85/124 (68.55%), Query Frame = 1
Query:  217 VGFSWAHVNGFGEQPLSXXXXXXXXXXFHDSASIRAHPVLLGLKGEDTQWVTVNLVSPHPSADDWLGVFSPAKFNSSSCPPVNDPKEQAPYICSAPIKYKYANESNSDYTKTGKATLNFRLINQ 588
            V  S +H NG G+Q LS           H SA I   P++LG +G+DT+WV V + +P PS+DDW+GVFSPAKF+SSSC P +D KE AP+ICSAP+KY YA +S+ DY KTG A L F LINQ
Sbjct:   14 VQVSSSHENGRGDQALSQIDIYAINLAQHHSAFIHVSPLVLGSQGQDTEWVNVVISNPEPSSDDWVGVFSPAKFDSSSCAPTDD-KEIAPFICSAPVKYMYA-KSSPDYMKTGNAVLKFMLINQ 135          
BLAST of DN617656 vs. ExPASy Swiss-Prot
Match: PPA24_ARATH (Probable inactive purple acid phosphatase 24 OS=Arabidopsis thaliana GN=PAP24 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 6.416e-29
Identity = 63/136 (46.32%), Postives = 86/136 (63.24%), Query Frame = 1
Query:  184 LCVLLCCVAA-NVGFSWAHVNGFGEQPLSXXXXXXXXXXFHDSASIRAHPVLLGLKGEDTQWVTVNLVSPHPSADDWLGVFSPAKFNSSSCPPVNDPKEQAPYICSAPIKYKYANESNSDYTKTGKATLNFRLINQ 588
            L VLLC +A  +      H NG G+Q L+             S  + A P +LG +GEDT+WV + + +P P++DDW+GVFSPAKF+S +C P +  KE+ PYICS+PIKY Y N S+ DY K+G  TL F++INQ
Sbjct:    5 LGVLLCLLALFSSSLCLDHANGRGDQALAQINVYETSLALDSSVKLHASPQVLGSQGEDTEWVNLAISNPKPTSDDWIGVFSPAKFDSGNCWPTSGGKEKTPYICSSPIKYMYCN-SHPDYMKSGNVTLKFQIINQ 139          
BLAST of DN617656 vs. ExPASy Swiss-Prot
Match: PPA1_ARATH (Probable inactive purple acid phosphatase 1 OS=Arabidopsis thaliana GN=PAP1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.172e-22
Identity = 58/138 (42.03%), Postives = 81/138 (58.70%), Query Frame = 1
Query:  175 RFALCVLLCCVAANVGFSWAHVNGFGEQPLSXXXXXXXXXXFHDSASIRAHPVLLGLKGEDTQWVTVNLVSPHPSADDWLGVFSPAKFNSSSCPPVNDPKEQAPYICSAPIKYKYANESNSDYTKTGKATLNFRLINQ 588
            R +L  +L  V + +G +   V    +QPLS           ++ A ++A P +LG  G+ ++ V V   SP PS DDW+GVFSPA FN+S+CP  N    Q P +CSAP+K++YAN SN  YT TG  +L  +LINQ
Sbjct:    2 RESLVAILVTVISVLG-AIHQVKSHEDQPLSGIAVHKITFGLNEKAYVKASPTVLGSNGQHSELVLVQYSSPKPSDDDWIGVFSPADFNASTCPGDN-KMVQPPRLCSAPVKFQYANFSNPRYTNTGTGSLKLQLINQ 137          
The following BLAST results are available for this feature:
BLAST of DN617656 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PPA27_ARATH1.527e-3054.84Probable inactive purple acid phosphatase 27 OS=Ar... [more]
PPA24_ARATH6.416e-2946.32Probable inactive purple acid phosphatase 24 OS=Ar... [more]
PPA1_ARATH1.172e-2242.03Probable inactive purple acid phosphatase 1 OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01I04_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617656 ID=DN617656; Name=DN617656; organism=Citrus sinensis; type=EST; length=589bp
TTTTTATATTTTATTTATTTATTTATAGAGAAAAAAAAACCCAGAGAAGA
AAGTCAAAGCAGAATTAAACTGAAAATATATTAATGGCATCAGAGGTCGG
CGGTCGTTGTTAATTTTGCGGGGTTTTGAGTGTCAGGGTCTGAGGTCTTG
TGCTGCAATTCAAGAATGGAGGAGAGGTTTGCACTGTGCGTGCTGTTGTG
CTGTGTTGCCGCAAATGTAGGCTTTAGCTGGGCACACGTTAATGGATTCG
GAGAGCAACCGCTGTCAAAAATTGCTATTCATAAGGCTATTGCTGCCTTT
CACGACTCGGCTTCTATTAGAGCACATCCTGTCCTTCTTGGTTTAAAGGG
GGAGGATACTCAATGGGTAACTGTGAATCTTGTGTCCCCTCATCCATCCG
CGGATGATTGGCTTGGAGTCTTTTCTCCTGCAAAATTCAACTCATCGTCC
TGTCCGCCAGTAAATGACCCAAAAGAACAGGCACCATATATCTGCTCAGC
CCCAATTAAGTACAAGTATGCAAATGAATCCAATTCAGATTATACAAAGA
CGGGCAAAGCTACTTTGAATTTTCGGCTTATAAATCAGC
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