DN617649

Overview
NameDN617649
Unique NameDN617649
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length576
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DN617649_ssr6 microsatellite DN617649_ssr6:6..17. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DN617649 vs. ExPASy Swiss-Prot
Match: SY121_ARATH (Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=1 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 2.012e-64
Identity = 126/171 (73.68%), Postives = 144/171 (84.21%), Query Frame = 1
Query:   70 MNDLFSGSFSRFRSEQASP--DHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRR 576
            MNDLFS SFSRFRS + SP  D       +QM     STGGVNLDKFF+DVESVK+ELKEL+RL+ +L + HE+SKTLHNAKAVKDLRS+MD DV  ALK AK+IK++LEALDR+NAANRSLPGCGPGSSSDRTRTSV+NGLRKKL DSM+SFN LR+ ISSEYR+TVQRR
Sbjct:    1 MNDLFSSSFSRFRSGEPSPRRDVAGGGDGVQMANPAGSTGGVNLDKFFEDVESVKEELKELDRLNETLSSCHEQSKTLHNAKAVKDLRSKMDGDVGVALKKAKMIKVKLEALDRANAANRSLPGCGPGSSSDRTRTSVLNGLRKKLMDSMDSFNRLRELISSEYRETVQRR 171          
BLAST of DN617649 vs. ExPASy Swiss-Prot
Match: SY122_ARATH (Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 4.978e-47
Identity = 99/169 (58.58%), Postives = 128/169 (75.74%), Query Frame = 1
Query:   70 MNDLFSGSFSRFRSEQASPDHPHHHTTIQMTENPNST-GGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQR 573
            MNDL SGSF    ++ +SP H H+    +   +  S  GG NLD FF DVE V ++LKEL+RL ++L++S+E+SKTLHNA AVK+L+ +MDADV+AALK A+ +K  LEALDR+N  NRSLP  GPGSSSDR RTSVVNGLRKKLKD ME F+ +R+ I++EY++TV R
Sbjct:    1 MNDLLSGSFKTSVADGSSPPHSHNIEMSKAKVSGGSCHGGNNLDTFFLDVEVVNEDLKELDRLCHNLRSSNEQSKTLHNANAVKELKKKMDADVTAALKTARRLKGNLEALDRANEVNRSLPESGPGSSSDRQRTSVVNGLRKKLKDEMEKFSRVRETITNEYKETVGR 169          
BLAST of DN617649 vs. ExPASy Swiss-Prot
Match: SY124_ARATH (Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 5.152e-44
Identity = 90/169 (53.25%), Postives = 125/169 (73.96%), Query Frame = 1
Query:   70 MNDLFSGSFSRFRSEQASPDHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRR 576
            MNDLFS SF ++   +            QM +  +    +NLDKFF+DVE+VKD +K +E L+ SLQ S+E+ KT+HNAK VK+LR++MD DV+  LK  K+IK +LEAL+++NA +R++ GCGPGSS+DRTRTSVV+GL KKLKD M+SF  LR R+++EY++TV+RR
Sbjct:    1 MNDLFSSSFKKYTDLKQQA---------QMDDIESGKETMNLDKFFEDVENVKDNMKGVETLYKSLQDSNEECKTVHNAKKVKELRAKMDGDVAQVLKRVKMIKQKLEALEKANANSRNVSGCGPGSSTDRTRTSVVSGLGKKLKDLMDSFQGLRARMNAEYKETVERR 160          
BLAST of DN617649 vs. ExPASy Swiss-Prot
Match: SY125_ARATH (Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 5.696e-43
Identity = 88/169 (52.07%), Postives = 125/169 (73.96%), Query Frame = 1
Query:   70 MNDLFSGSFSRFRSEQASPDHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRR 576
            MNDLFS SF + ++              Q+ +       +NLDKFF+DVE+VKD++K +E L+  LQ S+E+ KT+HNAK VK+LR++MD DV+  LK  K+IK +LEAL+++NA +R++PGCGPGSS+DRTR+SVV+GL KKLKD M+SF  LR R+++EY++TV+RR
Sbjct:    1 MNDLFSNSFKKNQA--------------QLGDVEAGQETMNLDKFFEDVENVKDDMKGVEALYKKLQDSNEECKTVHNAKKVKELRAKMDGDVAMVLKRVKIIKQKLEALEKANANSRNVPGCGPGSSTDRTRSSVVSGLGKKLKDLMDSFQGLRARMNNEYKETVERR 155          
BLAST of DN617649 vs. ExPASy Swiss-Prot
Match: SY123_ARATH (Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 4.082e-41
Identity = 86/170 (50.59%), Postives = 121/170 (71.18%), Query Frame = 1
Query:   70 MNDLFSGSFSRFRSEQASPDHPHHHTTIQMTENPN-STGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRR 576
            MNDL S SF R+          +H   +   E+ N S    NLD+FF  VESVK+++K ++ +H  LQ ++E+SKT+H++KAVK LR+RMD+ V+  LK  K+IK +L AL++SNAA R + GCGPGSS+DRTRTSVV+GL KKLKD M+ F  LR ++++EY++TV+RR
Sbjct:    1 MNDLISSSFKRYTDL-------NHQVQLDDIESQNVSLDSGNLDEFFGYVESVKEDMKAVDEIHKRLQDANEESKTVHDSKAVKKLRARMDSSVTEVLKRVKMIKTKLVALEKSNAAQRKVAGCGPGSSADRTRTSVVSGLGKKLKDMMDDFQRLRTKMATEYKETVERR 163          
BLAST of DN617649 vs. ExPASy Swiss-Prot
Match: SY131_ARATH (Putative syntaxin-131 OS=Arabidopsis thaliana GN=SYP131 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 1.362e-28
Identity = 66/171 (38.60%), Postives = 101/171 (59.06%), Query Frame = 1
Query:   70 MNDLFSGS--FSRFRSEQASPDHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRR 576
            MNDL  GS  FSR RS ++  +  H          P ++G + L  FF  V+ ++ + ++L++  N LQ +HE++K +  A A+K ++ RM+ DV    + ++ IK ++E LDR N  NR+ PGCG G+  DRTRT+    ++KK KD +  F  LRQ I  EYR+ V+RR
Sbjct:    1 MNDLLKGSLEFSRDRSNRSDIESGH---------GPGNSGDLGLSGFFKKVQEIEKQYEKLDKHLNKLQGAHEETKAVTKAPAMKSIKQRMERDVDEVGRISRFIKGKIEELDRENLENRTKPGCGKGTGVDRTRTATTIAVKKKFKDKISEFQTLRQNIQQEYREVVERR 162          
BLAST of DN617649 vs. ExPASy Swiss-Prot
Match: SY132_ARATH (Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 7.474e-27
Identity = 68/169 (40.24%), Postives = 93/169 (55.03%), Query Frame = 1
Query:   70 MNDLFSGSFSRFRSEQASPDHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRR 576
            MNDL  GSF   R + +          +++ E      G  L+ FF  V+ +  +  +L++L   LQ SHE+SK++  A A+K ++  M+ DV      A+ IK +LE LDR N ANR  PGC  GS  DR+RT+    L+KKLKD M  F  LR+ I  EYRD V RR
Sbjct:    1 MNDLLKGSFELPRGQSS------REGDVELGEQQGGDQG--LEDFFKKVQVIDKQYDKLDKLLKKLQASHEESKSVTKAPAMKAIKKTMEKDVDEVGSIARFIKGKLEELDRENLANRQKPGCAKGSGVDRSRTATTLSLKKKLKDKMAEFQVLRENIQQEYRDVVDRR 161          
BLAST of DN617649 vs. ExPASy Swiss-Prot
Match: SY112_ARATH (Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=2 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.905e-22
Identity = 50/129 (38.76%), Postives = 86/129 (66.67%), Query Frame = 1
Query:  190 NLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRR 576
            NL  FF ++E++K  ++E+  L   LQ  +E++K+ H+ K ++ LR RM++++    + A  +K  +E L++ N ANR+      GS  DRTRTS+ NG+RKKL+D+M  F+ LR+RI ++YR+ ++R+
Sbjct:   46 NLSGFFQEIETIKTLIEEITHLLLDLQNLNEETKSTHSTKILRGLRDRMESNIVTISRKANTVKTLIETLEKRNVANRT--SFKEGSCVDRTRTSITNGVRKKLRDTMSEFHRLRERIFADYREDLKRK 172          
BLAST of DN617649 vs. ExPASy Swiss-Prot
Match: SY111_ARATH (Syntaxin-related protein KNOLLE OS=Arabidopsis thaliana GN=KN PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.239e-22
Identity = 62/177 (35.03%), Postives = 99/177 (55.93%), Query Frame = 1
Query:   70 MNDLFSGSFSRF--------RSEQASPDHPHHHTTIQMTENPNSTGGVNLDKFFDDVESVKDELKELERLHNSLQTSHEKSKTLHNAKAVKDLRSRMDADVSAALKNAKLIKIRLEALDRSNAANRSLPGCGPGSSSDRTRTSVVNGLRKKLKDSMESFNELRQRISSEYRDTVQRR 576
            MNDL + SF  +        +  +A PD       ++M          NL  F ++ E VK E+  +      ++  HE+SK +H A++VK LR+++  ++ + L+ AK IK +LE +D++N   + L     G+   R+RT+V NGLRKKLK+ M  F  LRQ++ SEY++TV+RR
Sbjct:    1 MNDLMTKSFMSYVDLKKAAMKDMEAGPDFD-----LEMASTKADKMDENLSSFLEEAEYVKAEMGLISETLARIEQYHEESKGVHKAESVKSLRNKISNEIVSGLRKAKSIKSKLEEMDKANKEIKRL----SGTPVYRSRTAVTNGLRKKLKEVMMEFQGLRQKMMSEYKETVERR 168          
The following BLAST results are available for this feature:
BLAST of DN617649 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
SY121_ARATH2.012e-6473.68Syntaxin-121 OS=Arabidopsis thaliana GN=SYP121 PE=... [more]
SY122_ARATH4.978e-4758.58Syntaxin-122 OS=Arabidopsis thaliana GN=SYP122 PE=... [more]
SY124_ARATH5.152e-4453.25Syntaxin-124 OS=Arabidopsis thaliana GN=SYP124 PE=... [more]
SY125_ARATH5.696e-4352.07Syntaxin-125 OS=Arabidopsis thaliana GN=SYP125 PE=... [more]
SY123_ARATH4.082e-4150.59Syntaxin-123 OS=Arabidopsis thaliana GN=SYP123 PE=... [more]
SY131_ARATH1.362e-2838.60Putative syntaxin-131 OS=Arabidopsis thaliana GN=S... [more]
SY132_ARATH7.474e-2740.24Syntaxin-132 OS=Arabidopsis thaliana GN=SYP132 PE=... [more]
SY112_ARATH1.905e-2238.76Syntaxin-112 OS=Arabidopsis thaliana GN=SYP112 PE=... [more]
SY111_ARATH7.239e-2235.03Syntaxin-related protein KNOLLE OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01I01_f Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001I01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617649 ID=DN617649; Name=DN617649; organism=Citrus sinensis; type=EST; length=576bp
GTGGATTATTTATTTATTAGAATATAATTATCTCTCTGATATTCGCCCCA
AAAAACAAAAAAAAAAAAAATGAACGACCTATTCTCCGGATCCTTCTCTC
GCTTCCGCAGCGAGCAAGCTTCTCCCGATCACCCGCACCACCACACGACG
ATCCAGATGACGGAGAACCCGAACTCCACCGGCGGAGTCAACCTCGACAA
GTTCTTCGACGACGTCGAATCGGTCAAGGACGAGCTCAAGGAGCTCGAAA
GGCTACACAACAGCCTCCAGACGTCTCATGAGAAGAGCAAGACCTTACAC
AACGCGAAAGCCGTGAAAGACCTGCGCTCCCGAATGGACGCTGACGTCAG
CGCCGCGTTGAAGAATGCCAAGTTGATCAAGATCCGCCTGGAGGCGCTGG
ACCGGTCCAACGCCGCGAATCGGAGCCTCCCCGGCTGCGGACCGGGATCT
TCCTCGGACCGGACCAGGACCTCCGTGGTCAACGGGCTGAGGAAGAAGCT
GAAGGACTCGATGGAGAGTTTTAACGAGTTGAGGCAGAGGATTTCGTCCG
AGTATAGGGACACCGTTCAGAGGAGG
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