DN617646

Overview
NameDN617646
Unique NameDN617646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length603
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DN617646 vs. ExPASy Swiss-Prot
Match: SLSG3_BRAOL (S-locus-specific glycoprotein S13 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.384e-34
Identity = 72/137 (52.55%), Postives = 96/137 (70.07%), Query Frame = 3
Query:  216 AISVDTLTATQNLT--NGKTLVSSDDVFELGFFSPGSSGKWYIGIWYKNIAQRTYVWVANRDNPLANSSGVLRIINQRIGLFDGSQNLVWSSNQTKATN---PVAQLQDSGNFVLKEAGSD---EILWQSFDYPTDT 602
            A S++TL++T++LT  + +TLVS  +VFELGFF   SS +WY+GIWYK    RTYVWVANRDNPL+N  G L+I    + L D S   VWS+N T+       VA+L D+GNFV++++ S+   + LWQSFDYPTDT
Sbjct:   29 AFSINTLSSTESLTISSNRTLVSPGNVFELGFFKTTSSSRWYLGIWYKKFPYRTYVWVANRDNPLSNDIGTLKISGNNLVLLDHSNKSVWSTNVTRGNERSPVVAELLDNGNFVMRDSNSNNASQFLWQSFDYPTDT 165          
BLAST of DN617646 vs. ExPASy Swiss-Prot
Match: SLSG2_BRAOA (S-locus-specific glycoprotein BS29-2 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.914e-32
Identity = 68/137 (49.64%), Postives = 96/137 (70.07%), Query Frame = 3
Query:  216 AISVDTLTATQNL--TNGKTLVSSDDVFELGFFSPGSSGKWYIGIWYKNIAQRTYVWVANRDNPLANSSGVLRIINQRIGLFDGSQNLVWSSNQTKATN---PVAQLQDSGNFVLKEAGSDE---ILWQSFDYPTDT 602
            A S++TL++ ++L  +N +TLVS  +V ELGFF   SS +WY+G+WYK +++RTYVWVANRDNPL+ S G L+I N  + L D S   +WS+N T+       VA+L  +GNFVL+++  ++    LWQSFDYPTDT
Sbjct:   28 AFSINTLSSIESLKISNSRTLVSPGNVLELGFFRTPSSSRWYLGMWYKKLSERTYVWVANRDNPLSCSIGTLKISNMNLVLLDHSNKSLWSTNHTRGNERSPVVAELLANGNFVLRDSNKNDRSGFLWQSFDYPTDT 164          
BLAST of DN617646 vs. ExPASy Swiss-Prot
Match: SLSG6_BRAOL (S-locus-specific glycoprotein S6 OS=Brassica oleracea GN=SLSG PE=2 SV=2)

HSP 1 Score: 136.346 bits (342), Expect = 1.107e-31
Identity = 67/137 (48.91%), Postives = 95/137 (69.34%), Query Frame = 3
Query:  216 AISVDTLTATQNL--TNGKTLVSSDDVFELGFFSPGSSGKWYIGIWYKNIAQRTYVWVANRDNPLANSSGVLRIINQRIGLFDGSQNLVWSSNQTKATN---PVAQLQDSGNFVLKEAGSD---EILWQSFDYPTDT 602
            A S++TL++T++L  ++ +TLVS  + FELGFF   SS +WY+GIWYK +  RTYVWVANRDNPL+N+ G L+I    + L   +   VWS+N T+       VA+L  +GNFV++++ ++   E LWQSFDYPTDT
Sbjct:   29 AFSINTLSSTESLRISSNRTLVSPGNNFELGFFRTNSSSRWYLGIWYKKLLDRTYVWVANRDNPLSNAIGTLKISGNNLVLLGHTNKSVWSTNLTRGNERLPVVAELLSNGNFVMRDSSNNDASEYLWQSFDYPTDT 165          
BLAST of DN617646 vs. ExPASy Swiss-Prot
Match: SRK6_BRAOE (Putative serine/threonine-protein kinase receptor OS=Brassica oleracea var. acephala GN=SRK6 PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.222e-31
Identity = 67/140 (47.86%), Postives = 97/140 (69.29%), Query Frame = 3
Query:  207 PTIAISVDTLTATQNLT--NGKTLVSSDDVFELGFFSPGSSGKWYIGIWYKNIAQRTYVWVANRDNPLANSSGVLRIINQRIGLFDGSQNLVWSSNQTKATN---PVAQLQDSGNFVLKEAGSD---EILWQSFDYPTDT 602
            P ++I ++TL++T++LT  + KTLVS   +FE+GFF   S  +WY+G+WYK ++ RTYVWVANRDNPL+N+ G L+I    + L D S   VW +N T+       VA+L  +GNFV++++ ++   E LWQSFDYPTDT
Sbjct:   27 PALSIYINTLSSTESLTISSNKTLVSPGSIFEVGFFRTNS--RWYLGMWYKKVSDRTYVWVANRDNPLSNAIGTLKISGNNLVLLDHSNKPVWWTNLTRGNERSPVVAELLANGNFVMRDSSNNDASEYLWQSFDYPTDT 164          
BLAST of DN617646 vs. ExPASy Swiss-Prot
Match: SLSG4_BRAOL (S-locus-specific glycoprotein S14 (Fragment) OS=Brassica oleracea GN=SLSG PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.727e-30
Identity = 65/137 (47.45%), Postives = 94/137 (68.61%), Query Frame = 3
Query:  216 AISVDTLTATQNLT--NGKTLVSSDDVFELGFFSPGSSGKWYIGIWYKNIAQRTYVWVANRDNPLANSSGVLRIINQRIGLFDGSQNLVWSSNQTKATN---PVAQLQDSGNFVLKEAGSDE---ILWQSFDYPTDT 602
            A +++TL++ ++LT  + +TLVS  +VFELGFF   SS +WY+GIWYK ++ RTYVWVANRDNPL++S G L+I        D S   VWS+N T+       VA +  +GNFV++++ +++    LWQSFD+PTDT
Sbjct:   26 AFTINTLSSIESLTISSNRTLVSPGNVFELGFFRTNSSSRWYLGIWYKKVSDRTYVWVANRDNPLSSSIGTLKISGNNPCHLDHSNKSVWSTNLTRGNERSPVVADVLANGNFVMRDSNNNDASGFLWQSFDFPTDT 162          
BLAST of DN617646 vs. ExPASy Swiss-Prot
Match: SLSG1_BRAOA (S-locus-specific glycoprotein BS29-1 OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 75/161 (46.58%), Postives = 96/161 (59.63%), Query Frame = 3
Query:  162 HPCYTNXXXXXXXXXPTIAISVDTLTATQNLT--NGKTLVSSDDVFELGFF------SPGSSGKWYIGIWYKNIA-QRTYVWVANRDNPLANSSGVLRIINQRIGLFDGSQNLVWSSNQTKATN-PV-AQLQDSGNFVLKEAGS---DEILWQSFDYPTDT 602
            H  YT          P +  S +TL+  + LT  + KTLVS  DVFELGFF      SP  + +WY+GIWYK  +  RTYVWVANRDN L NS G L+I +  + L D S   VWS+N T   + PV A+L  +GNFVL+++ +   D  +WQSFDYP DT
Sbjct:    9 HHSYTLLFFVILVLFPHV-FSTNTLSPNEALTISSNKTLVSPGDVFELGFFKTTTRNSPDGTDRWYLGIWYKTTSGHRTYVWVANRDNALHNSMGTLKISHASLVLLDHSNTPVWSTNFTGVAHLPVTAELLANGNFVLRDSKTTALDRFMWQSFDYPVDT 168          
BLAST of DN617646 vs. ExPASy Swiss-Prot
Match: SLSG0_BRAOA (S-locus-specific glycoprotein OS=Brassica oleracea var. alboglabra GN=SLSG PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.267e-27
Identity = 75/161 (46.58%), Postives = 96/161 (59.63%), Query Frame = 3
Query:  162 HPCYTNXXXXXXXXXPTIAISVDTLTATQNLT--NGKTLVSSDDVFELGFF------SPGSSGKWYIGIWYKNIA-QRTYVWVANRDNPLANSSGVLRIINQRIGLFDGSQNLVWSSNQTKATN-PV-AQLQDSGNFVLKEAGS---DEILWQSFDYPTDT 602
            H  YT          P +  S +TL+  + LT  + KTLVS  DVFELGFF      SP  + +WY+GIWYK  +  RTYVWVANRDN L NS G L+I +  + L D S   VWS+N T   + PV A+L  +GNFVL+++ +   D  +WQSFDYP DT
Sbjct:    9 HHSYTLFFFVILVLFPHV-FSTNTLSPNEALTISSNKTLVSPGDVFELGFFKTTTRNSPDGTDRWYLGIWYKTTSGHRTYVWVANRDNALHNSMGTLKISHASLVLLDHSNTPVWSTNFTGVAHLPVTAELLANGNFVLRDSKTNDLDRFMWQSFDYPVDT 168          
The following BLAST results are available for this feature:
BLAST of DN617646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
SLSG3_BRAOL2.384e-3452.55S-locus-specific glycoprotein S13 OS=Brassica oler... [more]
SLSG2_BRAOA2.914e-3249.64S-locus-specific glycoprotein BS29-2 OS=Brassica o... [more]
SLSG6_BRAOL1.107e-3148.91S-locus-specific glycoprotein S6 OS=Brassica olera... [more]
SRK6_BRAOE3.222e-3147.86Putative serine/threonine-protein kinase receptor ... [more]
SLSG4_BRAOL2.727e-3047.45S-locus-specific glycoprotein S14 (Fragment) OS=Br... [more]
SLSG1_BRAOA1.267e-2746.58S-locus-specific glycoprotein BS29-1 OS=Brassica o... [more]
SLSG0_BRAOA1.267e-2746.58S-locus-specific glycoprotein OS=Brassica oleracea... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS11_01H23_r Parent Washington Navel Orange Scale-Infested Rind cDNA Library UCRCS11 Citrus sinensis cDNA clone CS_WEd0001H23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DN617646 ID=DN617646; Name=DN617646; organism=Citrus sinensis; type=EST; length=603bp
GAAAGTCGCGGCAGCGTCATGAGGCTCTACTTTCCTCTCCTATCGAACAA
CAACAAATGTCTTCAACAGGATTAAGCCAAATTAAAATTACCCTTAAATG
TTTCGTCATAGAGAGAAGAGAAACCTCAGTGAAGAACATGATCATGAATG
ATATAACAAGCCACCCTTGTTACACAAATCTTTTCTTAATTATCTTCATT
TTGTTTCCAACAATTGCCATCTCTGTAGACACCTTAACAGCAACCCAAAA
TCTCACAAACGGAAAAACCCTTGTCTCCTCCGATGATGTATTTGAGCTTG
GATTCTTCTCACCAGGCAGTTCAGGCAAATGGTACATCGGTATATGGTAC
AAGAACATTGCTCAGAGGACATATGTGTGGGTTGCTAACAGAGACAACCC
ACTTGCAAACTCCTCAGGAGTTCTCAGAATCATCAATCAAAGAATTGGCC
TTTTTGATGGATCACAGAATCTTGTCTGGTCATCCAATCAAACCAAGGCT
ACCAACCCAGTTGCACAATTGCAAGACTCTGGAAACTTCGTGCTAAAAGA
AGCTGGTAGTGATGAGATTCTCTGGCAAAGCTTTGATTATCCAACTGATA
CTC
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